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    21 repositories

    • DeNumerator

      Public
      An R package to enumerate the possible categories of genes in a complicated DeSeq experiment
      R
      •
      Other
      •0•2•0•0•Updated Nov 4, 2024Nov 4, 2024

    • MTP-DB

      Public
      The Membrane Transport Protein Database
      transcriptomicsphd-projecttransportome
      Python
      •
      GNU General Public License v3.0
      •0•1•12•0•Updated Nov 4, 2024Nov 4, 2024

    • 2410-Fiorio-PDAC_pH_ICTR

      Public
      R
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • compare_ranks

      Public
      An R package to compare ranked lists of stuff
      R
      •
      Other
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • .github

      Public
      Public documentation files for CMA-Lab
      0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • r4tcpl

      Public
      A collection of utility R functions used in a variety of our projects.
      R
      •
      Other
      •0•2•1•0•Updated Oct 14, 2024Oct 14, 2024

    • x.FASTQ

      Public
      Bash wrapper modules for the remote analysis of RNA-Seq data, with persistency features.
      Shell
      •
      MIT License
      •0•2•6•0•Updated Oct 7, 2024Oct 7, 2024

    • bioTEA

      Public
      bioTEA - A user friendly tool to perform transcript expression analysis
      dockermicroarraycommand-line-tooltranscriptomicsdifferential-gene-expressionbioinformatics-toolpythonlinux
      Python
      •
      MIT License
      •2•3•7•0•Updated Oct 1, 2024Oct 1, 2024

    • docker-cookbook

      Public
      These are some docker recipes that live in the TCP-Lab docker hub page.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • transportome_profiler

      Public
      Code to profile the expression of the transportome
      R
      •
      GNU General Public License v3.0
      •0•0•4•1•Updated Jul 2, 2024Jul 2, 2024

    • SeqLoader

      Public
      Constructors and methods for `xSeries` and `xModel` S3 classes
      R
      •0•0•6•0•Updated Jun 19, 2024Jun 19, 2024

    • data

      Public
      Protocols and HOW-Tos to manage data for the lab
      0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • gene_ranker

      Public
      Rank genes based on their expression following various metrics
      genomics
      Python
      •0•0•2•0•Updated Feb 27, 2024Feb 27, 2024

    • ICT.bib

      Public
      A systematic compilation of all works about the transportome, or transportome-related
      TeX
      •
      Other
      •0•0•2•0•Updated Feb 19, 2024Feb 19, 2024

    • docker-images

      Public
      Base recipies for docker images used by the lab
      Shell
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • transportome_profiler_paper

      Public
      TeX
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • handbook

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•0•Updated Oct 31, 2023Oct 31, 2023

    • MORPHEUS

      Public
      Multiparametric Morphometric Analysis of EUcaryotic cellS
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • kym

      Public
      Wavelet transform-based analyzer of biological signals
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • Atlas

      Public archive
      A dynamic interface with many remote databases of biological data
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • bioTEA-box

      Public
      The BioTEA's Docker container code
      R
      •
      MIT License
      •0•0•3•0•Updated Feb 10, 2023Feb 10, 2023