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    145 repositories

    • COPO-production

      Public
      COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.
      researchgenomicsomicsbiodiversitylife-sciencesmetadata-broker
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • SingleCellSchemas

      Public
      For resources relating to EI Cellgen ISP
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • grassroots-tutorials

      Public
      A set of tutorials on using the various parts of Grassroots
      0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • grassroots-docs

      Public
      Documentation about the Grassroots Infrastructure
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • grassroots_services_django_web

      Public
      JavaScript
      •1•0•0•9•Updated Nov 11, 2024Nov 11, 2024

    • FlowFI

      Public
      FlowFI is a python-based package for selecting important features for gating of flow cytometry events and analysis of these features.
      Python
      •1•0•0•0•Updated Nov 10, 2024Nov 10, 2024

    • grassroots-service-field-trial

      Public
      A Grassroots service for storing the data for field trials
      C
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 8, 2024Nov 8, 2024

    • grassroots-core

      Public
      The core libraries of the Grassroots infratructure
      C
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • grassroots-user-docs

      Public
      HTML
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • grassroots-accessions-service

      Public
      A Grassroots service for managing and querying various different plant accessions
      C
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • grassroots-build-tools

      Public
      Scripts to manage the building of the different Grassroots infrastructure components
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • rfparser

      Public
      Parse ResearchFish publications to update CKAN
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • EDP

      Public
      mainline production repository for EDP
      JavaScript
      •
      MIT License
      •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • COPO-documentation

      Public
      COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
      metadatasphinxreadthedocssphinx-documentationcopocopo-projectcopo-docs
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 4, 2024Nov 4, 2024

    • eisca

      Public
      A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • reposyncer

      Public
      GitHub workflow to sync various repo mirrors
      MIT License
      •1•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • simple_templates

      Public
      A module to get the correct data for a project on the opendata portal
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • opendata-projects

      Public
      A tool to set the iRODS metadata from a projects store
      Python
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • QCPipeline

      Public
      QC pipeline for genome assemblies
      Shell
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • Basecall2Assembly

      Public
      Snakemake pipeline that takes raw ONT and generates an assembly
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • grassroots-web-portal-static-onepage

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • grassroots-service-marti

      Public
      A service to integrate Grassroots Field Trials and MARTI data
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • TGACBrowser

      Public
      TGAC's Genome Browser
      JavaScript
      •0•10•1•25•Updated Oct 4, 2024Oct 4, 2024

    • grassroots-client-java

      Public
      JavaScript
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • Aequatus

      Public
      Earlham Institute's Synteny Browser
      JavaScript
      •
      GNU General Public License v3.0
      •0•7•1•17•Updated Sep 18, 2024Sep 18, 2024

    • grassroots-service-blast

      Public
      The BLAST services for the Grassroots infrastructure
      C++
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 13, 2024Sep 13, 2024

    • knowledge_base

      Public
      EI specific documentation (induction materials, tool/method specific advice); contributions made by EI users.
      0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • COPO-sample-audit

      Public
      to monitor the copo sample changes
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • grassroots-service-search

      Public
      A service to search across all of the Grassroots data and tools
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • grassroots-lucene

      Public
      Lucene engine customised for Grassroots data
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024