Repositories list

• OINC-seq

  Public
  oxidation induced nucleotide conversions

  Python

  •2•1•0•0•Updated Mar 22, 2024Mar 22, 2024

• LABRAT

  Public
  Lightweight Alignment Based Resolution of Alternative Three Prime Ends

  Python

  •

  MIT License

  •4•8•1•0•Updated Jan 26, 2024Jan 26, 2024

• OligoPools

  Public
  Scripts to make oligonucleotide pools and analyze data from them

  HTML

  •0•0•0•0•Updated May 10, 2023May 10, 2023

• AnalysisScripts

  Public
  A motley collection of scripts used for analysis of high-throughput sequencing data

  Python

  •

  MIT License

  •2•3•0•0•Updated Mar 10, 2023Mar 10, 2023

• FoldTDP43Oligos

  Public
  high throughput folding of oligonucleotides containing TDP43 motif from MPRA

  Python

  •0•0•0•0•Updated Jan 11, 2023Jan 11, 2023

• FeatureReachR

  Public
  R

  •3•3•2•0•Updated Aug 12, 2021Aug 12, 2021

• teaching

  Public
  teaching material

  HTML

  •2•5•1•0•Updated Sep 18, 2020Sep 18, 2020

• LS2

  Public
  Code for the analysis of the splicing activity of LS2 and its mutants

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 3, 2020Sep 3, 2020

• SubcellularRNAseqExample

  Public
  Example code for the analysis of neuronal subcellular RNAseq data

  HTML

  •1•0•0•0•Updated Sep 3, 2020Sep 3, 2020

• UniqueUTRseqs

  Public
  Identify transcript sequences that are unique to one polyadenylation isoform

  Python

  •0•0•0•0•Updated Feb 7, 2018Feb 7, 2018