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    15 repositories

    • sowing

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • superrec2

      Public
      Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
      reconciliationphylogeneticssyntenymaximum-parsimony
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Oct 17, 2024Oct 17, 2024

    • CoreTracker

      Public
      CoreTracker, a codon reassignment tracker
      genetic-codemetazoacodonspythongenomecodon-reassignment
      Python
      •
      Other
      •3•4•1•2•Updated Jun 17, 2024Jun 17, 2024

    • superrec-tutorial

      Public
      Perl
      •0•0•0•0•Updated Jul 4, 2023Jul 4, 2023

    • GATC

      Public
      Genetic Algorithm for gene Tree Construction/Correction optimal under sequence likelihood and reconciliation score
      gene-treesgenetic-algorithm
      C
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Mar 2, 2019Mar 2, 2019

    • EdChecker

      Public
      Computational methods for RNA editing sites prediction
      Python
      •0•0•0•0•Updated Sep 27, 2018Sep 27, 2018

    • SuperReconciliation

      Public
      Implementation of the Super-Reconciliation model for reconciling a set of trees accounting for segmental duplications and losses.
      bioinformaticsreconciliationgene-treessegmental-duplications
      C++
      •1•2•0•0•Updated Aug 28, 2018Aug 28, 2018

    • LabelGTC

      Public
      Implementation of LabelGTC algorithm
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 19, 2018Apr 19, 2018

    • SuGeT

      Public
      SuperGeneTree maker
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 19, 2018Apr 19, 2018

    • MiscTreeUtils

      Public
      Misc utils in python for phylogenetic analysis.
      Python
      •0•0•0•0•Updated Feb 1, 2018Feb 1, 2018

    • profileNJ

      Public
      Genome evolution-aware gene trees correction without losing sequence information
      Python
      •
      GNU General Public License v3.0
      •2•3•1•1•Updated Jul 18, 2017Jul 18, 2017

    • OrthoPara-ConstraintChecker

      Public
      A program to check if a given set of orthology/paralogy relations, with possible unknowns, is satisfiable or consistent with a species tree.
      Python
      •0•1•0•0•Updated Jun 13, 2016Jun 13, 2016

    • paralogy-corrector

      Public
      C++
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jan 5, 2015Jan 5, 2015

    • polytomy-solver-web

      Public
      Web application for various LBIT phylogenetic algorithms.
      Python
      •0•1•0•0•Updated Sep 3, 2014Sep 3, 2014

    • polytomy-solver-distance

      Public
      C++
      •0•1•1•0•Updated Aug 28, 2014Aug 28, 2014