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@VertebrateResequencing Vertebrate Resequencing

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    11 repositories

    • wr

      Public
      High performance Workflow Runner
      kubernetesgolangworkflowopenstacklsfworkflow-runner
      Go
      •
      GNU General Public License v3.0
      •13•30•69•1•Updated Sep 30, 2024Sep 30, 2024

    • vr-runner

      Public
      Runner pipelines
      Perl
      •2•9•0•2•Updated Jan 26, 2024Jan 26, 2024

    • muxfys

      Public
      High performance multiplexed user fuse mounting
      golangs3fuse-filesystemmultiplexer
      Go
      •
      GNU General Public License v3.0
      •2•19•1•7•Updated Mar 7, 2023Mar 7, 2023

    • pbwt

      Public
      Implementation of Positional Burrows-Wheeler Transform for genetic data
      C
      •37•4•0•1•Updated Mar 8, 2022Mar 8, 2022

    • bsub_jupyter_lab

      Public
      start jupyterlab python and R server on LSF farm5 node via bsub
      Python
      •5•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • vr-codebase

      Public
      The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
      Perl
      •34•31•0•1•Updated Mar 19, 2021Mar 19, 2021

    • vr-pipe

      Public
      Generic pipeline system
      Perl
      •
      Other
      •11•23•5•2•Updated Jul 20, 2018Jul 20, 2018

    • SEQUELstats

      Public
      Stats for PacBio Sequel data
      Shell
      •1•2•1•0•Updated Oct 17, 2017Oct 17, 2017

    • vrpipe_neo4j_plugin

      Public
      fast queries for time-critical things in VRPipe
      Java
      •
      Other
      •2•0•0•0•Updated Mar 27, 2017Mar 27, 2017

    • fastqcheck

      Public
      Generate statistics on and validate fastq files
      C
      •
      Other
      •6•1•0•1•Updated Nov 8, 2016Nov 8, 2016

    • update_pipeline

      Public
      Perl
      •
      Other
      •14•0•0•0•Updated Mar 24, 2015Mar 24, 2015