Bioinformatics Group @ SMU

All

96 repositories

yulab-smu.github.io
Public
🏠 Homepage for YuLab-SMU
HTML
•4•12•0•0•Updated Dec 25, 2024Dec 25, 2024
SVP
Public
R
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GNU General Public License v3.0
•0•9•0•0•Updated Dec 24, 2024Dec 24, 2024
enrichplot
Public
Visualization of Functional Enrichment Result
visualization pathway-analysis enrichment-analysis
R
•66•237•111•0•Updated Dec 20, 2024Dec 20, 2024
ggmsa
Public
🚥 Visualizing publication-quality multiple sequence alignment using ggplot2
R
•23•205•47•0•Updated Dec 20, 2024Dec 20, 2024
.github
Public
0•0•0•0•Updated Dec 18, 2024Dec 18, 2024
ggtangle
Public
Draw Network with Data
R
•0•7•0•0•Updated Dec 17, 2024Dec 17, 2024
aplotExtra
Public
Creating composite plot using 'aplot'
R
•4•8•0•0•Updated Dec 17, 2024Dec 17, 2024
aplot
Public
Decorate a plot with associated information
R
•15•99•9•0•Updated Dec 17, 2024Dec 17, 2024
scsaur
Public
0•0•0•0•Updated Dec 14, 2024Dec 14, 2024
Pharmacology-Resource
Public
0•1•0•0•Updated Dec 13, 2024Dec 13, 2024
ggfun
Public
useful functions for ggplot
R
•3•18•0•0•Updated Dec 3, 2024Dec 3, 2024
yulab.utils
Public
Miscellaneous functions commonly used by 'YuLab-SMU'.
R
•10•32•0•0•Updated Dec 3, 2024Dec 3, 2024
clusterProfiler
Public
📊 A universal enrichment tool for interpreting omics data
visualization go rstats kegg enrichment-analysis gsea
R
•254•1k•328•1•Updated Nov 29, 2024Nov 29, 2024
Supplemental_ggtree_placement
Public
Supplementary code and data
R
•2•0•0•1•Updated Nov 18, 2024Nov 18, 2024
fanyi
Public
Translate Words or Sentences via Online Translators
R
•6•52•7•0•Updated Nov 18, 2024Nov 18, 2024
ggtreeExtra
Public
🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
R
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GNU General Public License v3.0
•15•89•11•0•Updated Nov 4, 2024Nov 4, 2024
MicrobiotaProcess
Public
🦠 A comprehensive R package for deep mining microbiome
microbiome microbiome-analysis microbiome-data rstats
R
•37•183•87•0•Updated Nov 4, 2024Nov 4, 2024
seqcombo
Public
Visualization tool for genetic reassortment
R
•7•21•1•0•Updated Oct 30, 2024Oct 30, 2024
meshes
Public
🩺 MeSH Enrichment and Semantic analyses
semantic-similarity medical-subject-headings enrichment-analysis
R
•4•11•2•1•Updated Oct 30, 2024Oct 30, 2024
treeio
Public
🌱 Base Classes and Functions for Phylogenetic Tree Input and Output
parser exporter phylogenetic-trees
R
•26•99•25•1•Updated Oct 30, 2024Oct 30, 2024
ggtreeSpace
Public
🕸️Exploring phylomorphospace using 'ggtree'
R
•2•5•0•0•Updated Oct 30, 2024Oct 30, 2024
ggtreeDendro
Public
Drawing 'dendrogram' using 'ggtree'
clustering dendrogram
R
•3•12•0•0•Updated Oct 30, 2024Oct 30, 2024
ggsc
Public
🧠 Visualizing Single Cell and Spatial Transcriptomics
R
•12•43•0•0•Updated Oct 30, 2024Oct 30, 2024
MicrobiomeProfiler
Public
🦠 A shiny package for microbiome functional enrichment analysis
R
•7•37•0•1•Updated Oct 30, 2024Oct 30, 2024
ReactomePA
Public
Reactome Pathway Analysis
enrichment-analysis reactome-pathway-analysis reactomepa
R
•10•39•16•0•Updated Oct 30, 2024Oct 30, 2024
GOSemSim
Public
⛳ GO-terms Semantic Similarity Measures
bioinformatics gene-ontology semantic-similarity
R
•26•63•14•0•Updated Oct 30, 2024Oct 30, 2024
DOSE
Public
😷 Disease Ontology Semantic and Enrichment analysis
semantic-similarity disease-ontology enrichment-analysis
R
•36•118•23•2•Updated Oct 30, 2024Oct 30, 2024
ChIPseeker
Public
🎯 ChIP peak Annotation, Comparison and Visualization
annotation comparison epigenetics chip-seq atac-seq epigenomics visualization
R
•76•231•105•0•Updated Oct 30, 2024Oct 30, 2024
ggtree
Public
🎄Visualization and annotation of phylogenetic trees
visualization ggplot2 r annotations phylogenetic-trees
R
•173•850•166•1•Updated Oct 30, 2024Oct 30, 2024
sclet
Public
A Lightweight Toolkit for Single-Cell Data Analysis
R
•6•4•1•1•Updated Oct 9, 2024Oct 9, 2024