Repositories list

• Placental-and-Immune-Cell-DNA-Methylation-Reference-Panel-for-Bulk-Tissue-Deconvolution

  Public
  0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• Depressive-DNAm-Acceleration

  Public
  Depressive Symptoms are associated with DNA methylation age acceleration in a cross-sectional analysis of adults over age 50 in the United States

  R

  •0•2•0•0•Updated Oct 16, 2024Oct 16, 2024

• Racialization_CRP_Dementia

  Public
  Stata

  •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

• Urine-Metals-ASD

  Public
  Exposure to heavy metals in utero and autism spectrum disorder at age 3: A meta-analysis of two enriched-risk cohorts

  0•0•0•0•Updated May 8, 2024May 8, 2024

• CVD-Mortality-Prediction

  Public
  Adding environmental metals to CVD mortality prediction models to attempt to improve prediction performance. Secondary analysis using machine learning to additionally improve performance

  0•1•0•0•Updated Apr 28, 2024Apr 28, 2024

• NHANES_Chemicals_Immune

  Public
  Analysis of NHANES chemical exposures and immune measure outcomes

  R

  •4•4•0•0•Updated Apr 10, 2024Apr 10, 2024

• CTD_preterm_birth

  Public
  Analysis of environmental chemicals and preterm birth using the comparative toxicogenomics database

  0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• Smoking_Dementia_MR

  Public
  Code files for the project of smoking and dementia in HRS with MR

  R

  •

  MIT License

  •0•1•0•0•Updated Feb 21, 2024Feb 21, 2024

• Alcohol_Dementia_Mendelian_Randomization_HRS_2012_Wave

  Public
  R

  •0•1•0•0•Updated Dec 19, 2023Dec 19, 2023

• MESA-segregation-and-DNA-methylation-age-acceleration

  Public
  Neighborhood racial residential segregation is related to monocyte DNA methylation age acceleration: The Multi-Ethnic Study of Atherosclerosis

  0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

• BeadSorted.Saliva.EPIC

  Public
  BeadSorted.Saliva.EPIC data package available on Bioconductor

  R

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• .github

  Public
  0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• bakulskilab.github.io

  Public
  0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• Saliva_Reference

  Public
  Saliva cell type DNA methylation reference panel for epidemiological studies in children

  R

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• SmokingTCGA

  Public
  DNA methylation signature of smoking in lung cancer is enriched for exposure signatures in newborn and adult blood

  HTML

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• CTD_SpontAb

  Public
  Identification of environmental chemicals targeting miscarriage genes and pathways using the comparative toxicogenomics database

  R

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• HRS_AD_PGS_main_effect

  Public
  Cumulative genetic risk and APOE-ε4 are independently associated with dementia status in a multi-ethnic, population-based cohort.

  R

  •0•3•0•0•Updated Feb 27, 2023Feb 27, 2023

• Sheep_Adipose_BPA

  Public
  Developmental programming: Transcriptional regulation of visceral and subcutaneous adipose by prenatal bisphenol-A in female sheep

  R

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• Pb_hipp

  Public
  Single cell analysis of the effects of developmental lead (Pb) exposure on the mouse hippocampus

  0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• Sheep-RNAseq-Ovarian-Cells-and-Prenatal-Testosterone

  Public
  Developmental Programming: Sheep Granulosa and Theca Cell–Specific Transcriptional Regulation by Prenatal Testosterone

  Shell

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• rat_tce_rnaseq

  Public
  Sexually concordant and dimorphic transcriptional responses to maternal trichloroethylene and/or N-acetyl cysteine exposure in Wistar rat placental tissue

  HTML

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• Diabetes_Dementia_MR

  Public
  Type 2 diabetes and dementia in the Health and Retirement Study: A Mendelian randomization approach

  diabetesdementiamendelian-randomization

  R

  •2•12•0•0•Updated Feb 23, 2023Feb 23, 2023

• MARBLES-EARLI-Prenatal-Vitamins

  Public
  Prenatal vitamin intake in first month of pregnancy and DNA methylation in cord blood and placenta in two prospective cohorts

  0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• Cystatin-C-and-Dementia

  Public
  Decomposing Interaction and Mediating Effects of Race/Ethnicity and Circulating Cystatin C on Cognitive Status in the United States Health and Retirement Study

  HTML

  •0•1•0•0•Updated Feb 23, 2023Feb 23, 2023

• Developmental-Programming-adipose-depot-specific-regulation-of-non-coding-RNAs

  Public
  Developmental Programming: adipose depot-specific regulation of non-coding RNAs and their relation to coding RNA expression in prenatal testosterone and prenatal bisphenol-A -treated female sheep

  0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• ALS-Polygenic-Score

  Public
  Cumulative genetic risk and C9orf72 repeat status independently associate with ALS status in two case-control studies

  0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• FFCW-Sex-Differences-Autosomal-DNAm

  Public
  Sex-specific DNA methylation in saliva from the multi-ethnic Fragile Families and Child Wellbeing Study

  R

  •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• Education-Epigenetic-Clocks-and-Dementia-

  Public
  Additive interaction and mediation-interaction decomposition: DNA methylation age acceleration, education, and cognitive impairment in the Health and Retirement Study

  Rich Text Format

  •0•2•0•0•Updated Feb 22, 2023Feb 22, 2023

• DCVC-inhibits-LPS-inflammation-transcriptomic-pathways-in-macrophage-cell-model

  Public
  The trichloroethylene metabolite S-(1,2-dichlorovinyl)-l-cysteine inhibits lipopolysaccharide-induced inflammation transcriptomic pathways and cytokine secretion in a macrophage cell model

  Shell

  •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• Polymethylation-Scores-for-Prenatal-Maternal-Smoke-Exposure-Persist-In-Saliva

  Public
  Polymethylation scores for prenatal maternal smoke exposure persist until age 15 and are detected in saliva in the Fragile Families and Child Wellbeing cohort

  TeX

  •0•1•0•0•Updated Feb 22, 2023Feb 22, 2023