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    38 repositories

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Sep 22, 2021Sep 22, 2021

    • pb-falconc

      Public
      For Bioconda
      Nim
      •
      BSD 3-Clause Clear License
      •0•0•1•0•Updated Jul 12, 2021Jul 12, 2021

    • test-itree

      Public
      Compare C++ interval-tree implementations
      C++
      •0•0•0•0•Updated Apr 7, 2021Apr 7, 2021

    • pbbam

      Public
      PacBio BAM C++ library
      C++
      •
      BSD 3-Clause Clear License
      •17•0•0•0•Updated Feb 18, 2021Feb 18, 2021

    • threadpools

      Public
      Nim
      •
      MIT License
      •6•0•0•0•Updated Dec 2, 2020Dec 2, 2020

    • nim-jellyfish

      Public
      Nim wrapper for Jellyfish
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • pb

      Public
      PB utils in Nim
      Nim
      •
      BSD 3-Clause Clear License
      •0•0•0•0•Updated Oct 11, 2020Oct 11, 2020

    • nim-edlib

      Public
      Nim wrapper for edlib (Martin Šošić)
      bioinformatics
      Nim
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 10, 2020Oct 10, 2020

    • packages

      Public
      List of packages for Nimble
      Nim
      •704•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • nim-falcon

      Public
      Nim versions of FALCON executables -- See https://github.com/PacificBiosciences/FALCON
      Nim
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Oct 3, 2020Oct 3, 2020

    • c2nim

      Public
      c2nim is a tool to translate Ansi C code to Nim. The output is human-readable Nim code that is meant to be tweaked by hand before and after the translation process.
      Nim
      •
      MIT License
      •63•0•0•0•Updated Sep 25, 2020Sep 25, 2020

    • cligen

      Public
      Nim library to infer and generate command-line-interfaces
      Nim
      •
      ISC License
      •25•0•0•0•Updated Sep 22, 2020Sep 22, 2020

    • hts-nim

      Public
      nim wrapper for htslib for parsing genomics data files
      Nim
      •
      MIT License
      •26•1•0•0•Updated Sep 22, 2020Sep 22, 2020

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5k•0•0•0•Updated Nov 7, 2019Nov 7, 2019

    • Nim

      Public
      Nim is a compiled, garbage-collected systems programming language with a design that focuses on efficiency, expressiveness, and elegance (in the order of priority).
      Nim
      •
      Other
      •1.5k•0•0•0•Updated Sep 2, 2019Sep 2, 2019

    • nim-strfmt

      Public
      Clone of https://bitbucket.org/lyro/strfmt
      Nim
      •0•0•0•0•Updated Jul 25, 2019Jul 25, 2019

    • nim-heap

      Public
      Simple binary heap implementation in Nim
      Nim
      •
      MIT License
      •4•0•0•0•Updated May 24, 2019May 24, 2019

    • nim-networkx

      Public
      [WIP] Nim port of (a subset of) the pure-Python networkx library
      Nim
      •3•9•4•0•Updated May 21, 2019May 21, 2019

    • nim-kmers

      Public
      Library for bioinformatics (kmers, etc.) written in Nim
      Nim
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated May 1, 2019May 1, 2019

    • nim-pbbam

      Public
      Nim wrappers for pbbam
      Nim
      •0•0•0•0•Updated Apr 13, 2019Apr 13, 2019

    • msgpack4nim

      Public
      MessagePack serializer/deserializer implementation for Nim / msgpack.org[Nim]
      Nim
      •21•0•0•0•Updated Apr 6, 2019Apr 6, 2019

    • nim-DALIGNER

      Public
      Nim wrapper/translations of PacBio DALIGNER fork -- See https://github.com/PacificBiosciences/DALIGNER
      Nim
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • levenshtein

      Public
      Faster alternative to editDistance in Nim's standard library
      Nim
      •
      MIT License
      •0•0•0•0•Updated Mar 30, 2019Mar 30, 2019

    • nim-htslib

      Public
      [WIP] Nim wrapper for htslib
      Nim
      •
      BSD 3-Clause Clear License
      •0•0•0•0•Updated Feb 25, 2019Feb 25, 2019

    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      •
      Other
      •447•0•0•0•Updated Dec 5, 2018Dec 5, 2018

    • nim-DAZZ_DB

      Public
      OBSOLETE -- Use bio-nim/nim-DALIGNER
      Nim
      •0•0•0•0•Updated Apr 5, 2018Apr 5, 2018

    • DALIGNER

      Public
      Find all significant local alignments between reads
      C
      •
      Other
      •61•0•0•0•Updated Apr 5, 2018Apr 5, 2018

    • DAZZ_DB

      Public
      The Dazzler Data Base
      C
      •
      Other
      •33•0•0•0•Updated Apr 5, 2018Apr 5, 2018

    • nim-kmer

      Public
      DNA kmer operations for nim
      Nim
      •
      MIT License
      •2•0•0•0•Updated Nov 17, 2017Nov 17, 2017

    • try-workflow

      Public
      [WIP]Test various workflows engines on various systems
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 15, 2017Oct 15, 2017