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    20 repositories

    • metatlas

      Public
      Metabolite Atlas Main Repository
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•15•10•10•Updated Nov 12, 2024Nov 12, 2024

    • envnet

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • envnet_gnps2

      Public
      Python
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • metatlas-data

      Public
      Data files for metabolite atlas generation
      Jupyter Notebook
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • labkey_deploy

      Public
      Instructions and Docker setup for running our LIMS
      Shell
      •
      Other
      •3•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • infrastructure_automation

      Public
      Shell
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • ms-sentry

      Public
      Python
      •0•2•1•0•Updated May 30, 2024May 30, 2024

    • metatlas_prefilter

      Public
      Python
      •0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • blink

      Public
      Jupyter Notebook
      •
      Other
      •2•8•2•0•Updated Mar 5, 2024Mar 5, 2024

    • 2023_Drop-NIMS

      Public
      A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening - Data repository
      1•1•0•0•Updated May 8, 2023May 8, 2023

    • BASTet

      Public
      Berkeley Analysis and Storage Toolkit (BASTet)
      Jupyter Notebook
      •
      Other
      •1•8•1•0•Updated Apr 18, 2023Apr 18, 2023

    • magi

      Public
      Quickly find and score consensus between metabolite identifications and gene annotations
      Python
      •
      Other
      •2•17•20•0•Updated Mar 9, 2023Mar 9, 2023

    • simile

      Public
      Jupyter Notebook
      •
      Other
      •2•16•2•0•Updated Jul 20, 2022Jul 20, 2022

    • md2st

      Public
      metabolite databases to standardized tautomers
      Jupyter Notebook
      •1•0•0•0•Updated May 12, 2020May 12, 2020

    • omaat

      Public
      Jupyter Notebook
      •
      Other
      •2•4•2•1•Updated Jan 22, 2020Jan 22, 2020

    • nersc_python_install

      Public
      Shell
      •0•0•1•0•Updated Jul 31, 2019Jul 31, 2019

    • pactolus

      Public
      Pactolus
      Jupyter Notebook
      •
      Other
      •1•3•1•0•Updated Jul 19, 2019Jul 19, 2019

    • bmc_bioinf_2016_erbilgin

      Public
      Data and code to accompany manuscript
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated May 10, 2017May 10, 2017

    • ms-monitor

      Public
      Python
      •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • transform

      Public
      A service that provides import, upload, and download capabilities as well as tools for validating and converting between data types, both internal and external to KBase.
      Python
      •
      MIT License
      •27•0•0•0•Updated May 19, 2015May 19, 2015