{"payload":{"pageCount":44,"repositories":[{"type":"Public","name":"seqr-loading-pipelines","owner":"broadinstitute","isFork":false,"description":"hail-based pipelines for annotating variant callsets and exporting them to elasticsearch","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":28,"starsCount":22,"forksCount":20,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:45:47.836Z"}},{"type":"Public","name":"depmap-portal","owner":"broadinstitute","isFork":false,"description":"Code for the DepMap portal at depmap.org","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":12,"issueCount":0,"starsCount":5,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:39:27.496Z"}},{"type":"Public","name":"Drop-seq","owner":"broadinstitute","isFork":false,"description":"Java tools for analyzing Drop-seq data","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":19,"starsCount":119,"forksCount":34,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:37:36.542Z"}},{"type":"Public","name":"openidc-baseimage","owner":"broadinstitute","isFork":false,"description":"Apache with OpenIDC container using phusion baseimage as a base","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":2,"issueCount":1,"starsCount":3,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:32:20.165Z"}},{"type":"Public","name":"ops-terra-utils","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,1,2,30,89],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:31:26.674Z"}},{"type":"Public","name":"viral-pipelines","owner":"broadinstitute","isFork":false,"description":"viral-ngs: complete pipelines","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":18,"issueCount":22,"starsCount":52,"forksCount":28,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:30:25.762Z"}},{"type":"Public","name":"gnomad_methods","owner":"broadinstitute","isFork":false,"description":"Hail helper functions for the gnomAD project and Translational Genomics Group","allTopics":["genomics","genomes","exomes","hail"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":10,"starsCount":86,"forksCount":27,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:23:14.616Z"}},{"type":"Public","name":"gnomad_qc","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":9,"issueCount":7,"starsCount":65,"forksCount":25,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:21:54.520Z"}},{"type":"Public","name":"juniper","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":2,"issueCount":0,"starsCount":7,"forksCount":5,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[16,4,6,13,10,8,9,10,13,6,7,7,9,1,2,9,3,8,7,11,10,7,20,9,18,12,10,15,3,11,10,9,12,7,15,4,7,16,7,18,13,6,16,12,17,4,7,5,2,6,19,10],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:15:00.263Z"}},{"type":"Public","name":"tandem-repeat-catalog","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,26,0,1,0,0,0,0,0,0,0,0,0,19,21,10,30,17,9,31,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:14:30.165Z"}},{"type":"Public","name":"TAG-public","owner":"broadinstitute","isFork":false,"description":"Official workflows published by the Broad Institute's Genomics Platform Translation Analysis Group (TAG)","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":12,"issueCount":1,"starsCount":5,"forksCount":2,"license":null,"participation":[2,0,2,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,6,0,0,0,0,0,0,0,0,0,22,18,5,0,0,10,0,0,0,0,0,0,3,0,4,0,0,0,0,0,2,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T20:01:51.075Z"}},{"type":"Public","name":"cromwell","owner":"broadinstitute","isFork":false,"description":"Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments","allTopics":["docker","application","cloud","bioinformatics","scala","executor","hpc","containers","wdl","ga4gh","workflow-description-language","workflow-execution","workflow"],"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":52,"issueCount":739,"starsCount":988,"forksCount":357,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[3,5,3,2,0,2,3,2,1,0,7,7,5,0,1,3,1,2,3,1,1,3,7,2,5,4,0,3,5,4,1,0,10,11,4,2,1,3,5,1,6,1,0,3,3,3,1,7,11,5,12,4],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T19:55:58.700Z"}},{"type":"Public","name":"dig-dug-portal","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Vue","color":"#41b883"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[24,20,13,19,0,5,12,8,11,9,13,8,24,12,7,4,12,7,6,0,0,0,4,14,11,10,20,10,25,0,0,6,6,8,30,3,9,11,3,11,2,3,10,11,3,4,2,2,0,3,3,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T19:51:36.295Z"}},{"type":"Public","name":"warp-tools","owner":"broadinstitute","isFork":false,"description":"This repository contains all containers that WARP uses.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":10,"issueCount":1,"starsCount":9,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T19:45:26.719Z"}},{"type":"Public","name":"gatk-sv","owner":"broadinstitute","isFork":false,"description":"A structural variation pipeline for short-read sequencing","allTopics":["structural-variation","structural-variants","bioinformatics","genomics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":25,"issueCount":72,"starsCount":169,"forksCount":70,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,2,2,1,0,0,0,2,0,0,1,1,0,0,4,1,4,1,2,0,0,0,3,0,0,0,0,0,1,0,10,8,4,0,2,4,5,2,3,4,0,0,0,1,0,0,6,2,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T19:41:47.660Z"}},{"type":"Public","name":"gatk","owner":"broadinstitute","isFork":false,"description":"Official code repository for GATK versions 4 and up","allTopics":["science","bioinformatics","genomics","genome","ngs","sequencing","dna","spark","gatk"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":138,"issueCount":1210,"starsCount":1679,"forksCount":587,"license":"Other","participation":[2,0,2,0,0,0,1,4,0,2,1,12,3,0,0,0,0,1,2,1,0,1,0,1,7,3,1,1,2,2,1,1,2,2,1,0,4,0,1,6,6,1,3,1,2,1,1,0,0,3,1,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T19:27:48.241Z"}},{"type":"Public","name":"viral-assemble","owner":"broadinstitute","isFork":false,"description":"viral-ngs: genome assembly and scaffolding","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":7,"forksCount":2,"license":"Other","participation":[0,0,0,3,0,1,0,0,0,1,0,0,0,0,0,7,0,0,0,0,0,0,0,0,18,26,0,9,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,6,0,0,0,0,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T18:55:23.844Z"}},{"type":"Public","name":"rawls","owner":"broadinstitute","isFork":false,"description":"Rawls service for DSDE","allTopics":[],"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":16,"issueCount":0,"starsCount":25,"forksCount":4,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[2,8,8,5,5,3,5,5,0,3,16,6,7,0,5,8,2,5,4,1,7,1,5,11,4,6,10,12,2,5,9,10,4,2,9,18,7,6,8,8,9,7,4,6,5,13,11,9,4,9,5,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T18:34:28.074Z"}},{"type":"Public","name":"sherlock","owner":"broadinstitute","isFork":false,"description":"DSP DevOps's deployment source-of-truth service","allTopics":["golang","postgres","gorm"],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":5,"issueCount":0,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T18:09:26.134Z"}},{"type":"Public","name":"CTAT-LRF-Paper","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Roc","color":"#7c38f5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T18:07:22.008Z"}},{"type":"Public","name":"single_cell_portal_core","owner":"broadinstitute","isFork":false,"description":"Rails/Docker application for the Broad Institute's single cell RNA-seq data portal","allTopics":["rna-seq-analysis","single-cell-genomics","human-cell-atlas"],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":6,"issueCount":0,"starsCount":62,"forksCount":26,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T17:54:57.420Z"}},{"type":"Public","name":"anvil_tdr_ingest","owner":"broadinstitute","isFork":false,"description":"Resources related to ingesting AnVIL datasets into Terra Data Repository","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T17:38:08.142Z"}},{"type":"Public","name":"sam","owner":"broadinstitute","isFork":false,"description":"workbench identity and access management","allTopics":[],"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":92,"issueCount":3,"starsCount":42,"forksCount":12,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T17:31:04.945Z"}},{"type":"Public","name":"genetic-prevalence-estimator","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":44,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T16:01:46.788Z"}},{"type":"Public","name":"datarepo-helm","owner":"broadinstitute","isFork":false,"description":"A helm repo for Broad Data Science Platforms helm charts","allTopics":[],"primaryLanguage":{"name":"Mustache","color":"#724b3b"},"pullRequestCount":5,"issueCount":0,"starsCount":5,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T15:38:13.507Z"}},{"type":"Public","name":"datarepo-helm-definitions","owner":"broadinstitute","isFork":false,"description":"Helm deployment specific values and definitions for Dev, Integration and Prod","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":10,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":[0,13,12,2,10,6,5,5,4,7,8,6,13,0,5,15,18,11,4,15,22,10,8,15,13,8,7,13,15,5,17,16,14,9,9,14,14,10,8,8,11,9,11,14,10,13,23,14,8,19,8,13],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T15:35:26.983Z"}},{"type":"Public","name":"delphy","owner":"broadinstitute","isFork":false,"description":"Fast, scalable, accurate and accessible Bayesian phylogenetics","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":25,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T15:21:03.015Z"}},{"type":"Public","name":"shibboleth-service-provider","owner":"broadinstitute","isFork":false,"description":"A generic Shibboleth service provider service for use in Shibboleth authentication schemes.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":4,"issueCount":1,"starsCount":2,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T15:13:40.904Z"}},{"type":"Public","name":"viral-core","owner":"broadinstitute","isFork":false,"description":"viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":9,"starsCount":3,"forksCount":0,"license":"Other","participation":[0,0,0,2,5,4,0,0,7,0,1,0,0,0,0,0,0,0,0,0,0,0,0,3,4,0,0,0,1,2,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,10,0,0,1,0,0,5],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T14:22:26.576Z"}},{"type":"Public","name":"accessibility_peak_gene_predictor","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T13:17:37.482Z"}}],"repositoryCount":1294,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"broadinstitute repositories"}