Repositories list

• pydruglogics

  Public
  Construct, optimize Boolean models and perform in-silico perturbations of the models.

  genetic-algorithmblisshsa+ 3boolean-modeldrug-target-interactionsdrug-synergy

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• AGS_synergies

  Public
  R

  •1•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• ags-paper

  Public
  Sup. Material & Report for AGS paper

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 15, 2023Sep 15, 2023

• tfcheckpoint-umap

  Public
  UMAP-enabled 2D representation of the TFcheckpoint protein dataset

  umapgo-annotationtfcheckpoint

  R

  •

  MIT License

  •0•0•0•0•Updated Jun 1, 2022Jun 1, 2022

• brf-bias

  Public
  Data analyses related to Truth Density bias in commonly used Boolean Regulatory Functions

  complexityparameterizationboolean-functions

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

• synergy-tutorial

  Public
  Turorial for the DrugLogics software pipeline

  tutorialsoftware-tutorial

  HTML

  •

  MIT License

  •0•1•0•0•Updated Feb 9, 2022Feb 9, 2022

• druglogics-synergy

  Public
  Runs sequentially Gitsbe and Drabme, from model calibration to drug synergy prediction, all in one go

  Java

  •

  MIT License

  •0•2•0•0•Updated Feb 8, 2022Feb 8, 2022

• druglogics-dep

  Public
  Miscellaneous dependencies repository

  Shell

  •

  MIT License

  •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022

• druglogics-doc

  Public
  DrugLogics Software documentation

  documentationbookdowndruglogics-doc

  TeX

  •0•1•0•0•Updated Nov 15, 2021Nov 15, 2021

• drabme

  Public
  Drug Response Analysis to Boolean Model Ensembles

  drug-discoveryblisshsa+ 1boolean-model

  Java

  •

  MIT License

  •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• gitsbe

  Public
  Generic Interactions To Specific Boolean Equations

  genetic-algorithmmodeling-toolparameterization+ 2boolean-modelboolean-functions

  Java

  •

  MIT License

  •0•1•1•0•Updated Nov 15, 2021Nov 15, 2021

• abmlog

  Public
  A generator of all possible boolean models with link operators

  generatorboolean-modelattractors

  Java

  •

  MIT License

  •0•1•0•0•Updated Nov 12, 2021Nov 12, 2021

• gitsbe-model-analysis

  Public
  Ensemble boolean model analyses related to drug prediction performance

  modelingdata-analysislogical-modeling+ 1gitsbe

  TeX

  •

  MIT License

  •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021

• druglogics-roc

  Public
  Shiny app for generation of ROC curves

  rshinyroc-curve

  R

  •

  MIT License

  •1•0•0•0•Updated May 15, 2021May 15, 2021

• cascade

  Public
  CASCADE - CAncer Signaling CAusality DatabasE

  databasecancerinteractions+ 1causal-networks

  MIT License

  •1•1•0•0•Updated Apr 21, 2021Apr 21, 2021

• cascade-pan

  Public
  Pipeline simulations for higher-order drug combinations in the CASCADEs

  R

  •0•0•0•0•Updated Dec 30, 2020Dec 30, 2020

• bool-param-maps

  Public
  Boolean parameterization maps using UMAP

  randomforestparameterizationboolean-model+ 1umap

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2020Dec 19, 2020

• sintef-obs-synergies

  Public
  Synergy assesement of SINTEF data using Rbbt

  synergyblisshsa+ 1sintef

  R

  •

  MIT License

  •0•0•0•0•Updated Dec 9, 2020Dec 9, 2020

• influential-nodes

  Public
  Influential node identification project

  Jupyter Notebook

  •0•1•0•0•Updated Jul 19, 2020Jul 19, 2020