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@fabrylab Biophysics Group at the University of Erlangen-Nuremberg

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    19 repositories

    • MP_ventilation

      Public
      script to compute the ventilator parameters (VT, rr, I:E ratio) that minimize mechanical power for a given alveolar minute ventilation
      Python
      •
      Other
      •0•2•0•0•Updated Dec 5, 2024Dec 5, 2024

    • YoloViewer

      Public
      Python
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • shear_flow_deformation_cytometer

      Public
      Python
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated May 14, 2024May 14, 2024

    • clickpoints

      Public
      Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help t…
      Python
      •
      GNU General Public License v3.0
      •4•16•3•0•Updated Jan 22, 2024Jan 22, 2024

    • pyTFM

      Public
      2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
      cellmechanicstraction-forcestressestraction-force-microscopymonolayer-stress-microscopy
      Python
      •
      GNU General Public License v3.0
      •8•22•2•1•Updated Dec 19, 2023Dec 19, 2023

    • Deformation_Cytometer

      Public
      a low cost easy to use deformation cytometer
      Jupyter Notebook
      •1•1•0•1•Updated Mar 25, 2023Mar 25, 2023

    • spheroid-tracking

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 29, 2022Jul 29, 2022

    • 2Camera_Qt

      Public
      Python
      •0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • example_data_for_pyTFM

      Public
      example data for pyTFM
      Python
      •0•0•1•0•Updated May 10, 2021May 10, 2021

    • localAlignement

      Public
      A clickpoints addon to analyze the alignement of vector fields close to manually drawn lines
      Python
      •0•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • SegmenationEvaluation

      Public
      clickpoints addon to compare two segmentation algorithms
      Python
      •0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • tracking_andreas

      Public
      collection of tracking scripts by Andreas
      Python
      •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • spheroid_invasion_assay

      Public
      Invasiveness of 3D spheroids using the radial cell density profile.
      Python
      •0•1•0•0•Updated Nov 9, 2020Nov 9, 2020

    • pengu_track

      Public
      Master thesis Alexander Winterl, tracking algorithms for penguins and cells.
      trackingmaster-thesispenguin
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • fiber-orientation

      Public
      Evaluates fiber orientation
      Jupyter Notebook
      •0•1•0•0•Updated Sep 29, 2020Sep 29, 2020

    • Bioprinter

      Public
      scripts to use the bioprinter
      Python
      •0•0•0•0•Updated Jul 5, 2020Jul 5, 2020

    • 3D_piv_example_data

      Public
      A simple data set for 3D Particel Image Veolcimetry
      1•3•0•0•Updated Jun 19, 2020Jun 19, 2020

    • clickpointsexamples

      Public
      Some example datasets for ClickPoints
      Python
      •0•0•0•0•Updated Jun 16, 2020Jun 16, 2020

    • Classic-Invasion-Assay

      Public
      Analysis of cingle cell invasion depth of cells beeing seeded of top of a (collagen-)gel. Cells need to be imaged with BF and Fluo (Hoechst).
      Python
      •0•0•0•0•Updated Mar 6, 2020Mar 6, 2020