Repositories list

• tools-galaxyp

  Public
  Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

  JavaScript

  •

  MIT License

  •58•34•63•43•Updated Oct 27, 2024Oct 27, 2024

• CancerResearch2017

  Public
  1•0•0•0•Updated Jul 20, 2023Jul 20, 2023

• mvpapplication-git

  Public
  The Galaxy MVP visualization plugin enables viewing of results produced from workflows integrating genomic sequencing data and mass spectrometry proteomics data.

  JavaScript

  •2•1•0•0•Updated Aug 10, 2022Aug 10, 2022

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Jun 27, 2022Jun 27, 2022

• proteomics-pipelines

  Public
  A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• mzToSQLite

  Public
  Convert proteomics data files into a SQLite database

  Java

  •

  GNU General Public License v2.0

  •1•1•1•0•Updated Oct 28, 2021Oct 28, 2021

• metaquantome

  Public
  Python

  •

  Apache License 2.0

  •6•5•11•2•Updated Jun 16, 2021Jun 16, 2021

• metaquantome_mcp_analysis

  Public
  Analysis scripts for the metaQuantome MCP paper

  bioinformaticsproteomicsmetaquantome

  HTML

  •

  GNU General Public License v3.0

  •4•0•1•0•Updated Feb 22, 2021Feb 22, 2021

• psm_fragments

  Public
  PSM validation against ion fragmentation

  Python

  •0•1•0•0•Updated Oct 14, 2020Oct 14, 2020

• egglet

  Public
  small data for eggnog-mapper testing

  Shell

  •1•0•0•0•Updated Aug 25, 2020Aug 25, 2020

• fastg2protlib

  Public
  FASTG to Protein FASTA

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 28, 2020Jul 28, 2020

• docker-galaxyp

  Public
  🐳 Galaxy Docker repository with tools for proteomics (GalaxyP flavour)

  usegalaxyproteomicsgalaxy+ 1galaxy-docker

  Dockerfile

  •

  MIT License

  •5•7•1•0•Updated Mar 4, 2019Mar 4, 2019

• query_tabular_supplementary_material

  Public
  The information in this repository contains the Supplemental Materials for the F1000Rearch paper Improve your Galaxy text life: The Query Tabular Tool.

  MIT License

  •0•0•0•0•Updated Dec 21, 2018Dec 21, 2018

• OpenContact

  Public
  Python

  •0•0•0•0•Updated Oct 11, 2018Oct 11, 2018

• single_peptide

  Public
  HTML

  •2•0•0•0•Updated Sep 24, 2018Sep 24, 2018

• ABRF2018

  Public
  CSS

  •1•0•0•0•Updated Apr 13, 2018Apr 13, 2018

• galaxymetaproteomics

  Public
  CSS

  •1•1•0•0•Updated Apr 2, 2018Apr 2, 2018

• protk-galaxytools

  Public
  Galaxy tool wrappers for protk

  2•0•0•0•Updated Mar 28, 2018Mar 28, 2018

• update_nr

  Public
  script to automate updating nr database in galaxy

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 15, 2017Dec 15, 2017

• gcc2017

  Public
  2•0•0•0•Updated Dec 5, 2017Dec 5, 2017

• revigoGalaxy

  Public
  Mako

  •0•0•0•0•Updated Nov 30, 2017Nov 30, 2017

• validate_fasta_database

  Public
  Galaxy tool to validate a FASTA database by comparing it to known FASTA formats.

  Java

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Nov 17, 2017Nov 17, 2017

• asms2017

  Public
  2•0•0•0•Updated Aug 31, 2017Aug 31, 2017

• galaxypedu

  Public
  1•0•0•0•Updated Aug 21, 2017Aug 21, 2017

• blast_diamond_comparison

  Public
  shell script to compare blast and diamond sequence mappers

  Shell

  •0•0•0•0•Updated Aug 8, 2017Aug 8, 2017

• MetaproteomicsResearch2017

  Public
  CSS

  •1•0•0•0•Updated Apr 18, 2017Apr 18, 2017

• abrf2017

  Public
  1•0•0•0•Updated Mar 23, 2017Mar 23, 2017

• publications

  Public
  0•0•0•0•Updated Jan 24, 2017Jan 24, 2017

• asms2016

  Public
  CSS

  •0•0•0•0•Updated Jun 8, 2016Jun 8, 2016

• abrf2016

  Public
  Workshop at ABRF 2016 SW4: The Galaxy Platform for Multi-Omic Data Analysis and Informatics

  2•0•0•0•Updated Feb 19, 2016Feb 19, 2016