Repositories list

• mutyh_human_pedigree

  Public
  Repository for code associated with Young & Beichman et al. "A maternal germline mutator phenotype in a family affected by heritable colorectal cancer"

  R

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• mammal_mutation_spectra

  Public
  Scripts used to generate Beichman, Robinson, Lin, Nigenda-Morales, Moreno-Estrada, & Harris. “Evolution of the mutation spectrum across a mammalian phylogeny”

  R

  •0•0•0•0•Updated Aug 21, 2023Aug 21, 2023

• mutyper

  Public
  Ancestral k-mer mutation types for SNP data

  Python

  •

  MIT License

  •3•7•6•0•Updated May 11, 2023May 11, 2023

• elife_CAN1_paper

  Public
  code to generate plots for the 2021 eLife paper

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• mutator-epistasis-manuscript-2

  Public
  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

• mushi

  Public
  [mu]tation [s]pectrum [h]istory [i]nference

  Python

  •

  MIT License

  •6•24•4•1•Updated Jan 31, 2022Jan 31, 2022

• mushi-pipelines

  Public
  Data analysis pipelines for the mushi paper

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 23, 2021Mar 23, 2021

• gagp_mut_evol

  Public
  Code for generating the main figures of Goldberg & Harris 2019 preprint

  R

  •0•0•0•0•Updated Sep 24, 2020Sep 24, 2020