Repositories list

• lab-website-new

  Public
  JavaScript

  •

  MIT License

  •1•0•1•0•Updated Nov 7, 2024Nov 7, 2024

• cohort-notes

  Public
  For Jill, Ira, and Ashlyn to practice GitHub skills in a safe place

  0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

• RNARePore

  Public
  Direct detection of RNA repair by nanopore sequencing

  Shell

  •0•2•0•0•Updated Feb 6, 2023Feb 6, 2023

• al-folio

  Public
  A beautiful, simple, clean, and responsive Jekyll theme for academics

  JavaScript

  •

  MIT License

  •11k•0•0•0•Updated Aug 25, 2021Aug 25, 2021

• trackhub

  Public
  Public UCSC track hub

  Shell

  •1•1•1•0•Updated Apr 17, 2021Apr 17, 2021

• sc-haircut

  Public
  Pipeline and plotting code for single-cell Haircut

  C

  •0•0•2•0•Updated Mar 15, 2021Mar 15, 2021

• endoU

  Public
  Physiologic RNA Targets and Refined Sequence Specificity of Coronavirus EndoU

  R

  •0•0•0•0•Updated Oct 23, 2020Oct 23, 2020

• scrunchy

  Public
  R toolkit for the analysis of single-cell functional heterogeneity

  single-cell-rna-seqsingle-cell-analysis

  R

  •

  Other

  •3•2•15•1•Updated Nov 6, 2019Nov 6, 2019

• callingcards

  Public
  Data and Software for Cdc7 calling cards analysis

  Shell

  •0•0•0•0•Updated Mar 11, 2017Mar 11, 2017

• twoprime

  Public
  analysis and workflow for twoprime-seq

  Python

  •1•0•0•0•Updated Feb 21, 2017Feb 21, 2017

• modmap

  Public
  Tools for examining modified nucleobases

  Shell

  •2•2•1•0•Updated Sep 12, 2016Sep 12, 2016

• 5OH

  Public
  Analysis for 5´-hydroxyl RNA cloning

  R

  •1•1•1•0•Updated Sep 12, 2016Sep 12, 2016

• stivers-hiv

  Public
  Analysis of HIV integration sties

  Python

  •0•0•0•0•Updated Feb 11, 2016Feb 11, 2016

• utilities

  Public
  Various utilities under development

  Python

  •0•0•0•0•Updated Feb 13, 2015Feb 13, 2015