Repositories list

• kf-cbioportal-etl

  Public
  Repository of scripts used to convert dataservice metadata and DRC processed data into cbio portal loading format.

  Python

  •

  Apache License 2.0

  •0•2•10•0•Updated Nov 15, 2024Nov 15, 2024

• kf-portal-ui

  Public
  📊 The Kids First Data Resource Portal and Social Network User Interface

  javascriptuiportal+ 1react

  TypeScript

  •

  Apache License 2.0

  •15•25•72•14•Updated Nov 15, 2024Nov 15, 2024

• kf-api-dataservice

  Public
  🗄️ Primary API for interacting with the Kids First data

  pythonapiflask+ 1rest

  Python

  •

  Apache License 2.0

  •3•5•28•4•Updated Nov 15, 2024Nov 15, 2024

• kf-germline-workflow

  Public
  Repository for Germline CNV, SNV, and SV Tools and Workflows

  Common Workflow Language

  •0•1•0•1•Updated Nov 14, 2024Nov 14, 2024

• kf-api-arranger

  Public
  🏭 a data-model aware GraphQL API that sits above an Elasticsearch cluster

  nodejsapigraphql+ 1docker

  TypeScript

  •

  Apache License 2.0

  •0•0•0•10•Updated Nov 14, 2024Nov 14, 2024

• kf-lib-data-ingest

  Public
  🏭 Kids First Data Ingest Library

  pythondockeretl+ 3data-wranglingingestgraph

  Python

  •

  Apache License 2.0

  •0•5•24•3•Updated Nov 12, 2024Nov 12, 2024

• kf-rnaseq-workflow

  Public
  🔬 RNA-Seq workflow for Kids-First DRC

  bioinformaticscwldrc-harmonization

  Common Workflow Language

  •

  Apache License 2.0

  •8•9•4•0•Updated Nov 11, 2024Nov 11, 2024

• kf-somatic-workflow

  Public
  🔬 Somatic workflow for Kids-First

  bioinformaticscwldrc-harmonization

  Common Workflow Language

  •2•11•0•0•Updated Nov 11, 2024Nov 11, 2024

• kf-dev-single-cell-rna

  Public
  Common Workflow Language

  •

  Apache License 2.0

  •1•1•0•0•Updated Nov 8, 2024Nov 8, 2024

• kf-key-management

  Public
  🏭 Application for storing user api tokens from third party services.

  javaawsaws-lambda

  Java

  •

  Apache License 2.0

  •3•3•0•3•Updated Nov 6, 2024Nov 6, 2024

• kf-alignment-workflow

  Public
  🔬 Alignment workflow for Kids-First DRC

  bioinformaticscwldrc-harmonization

  Common Workflow Language

  •

  Apache License 2.0

  •6•10•3•0•Updated Nov 5, 2024Nov 5, 2024

• kf-api-study-creator

  Public
  📂 Powers investigator-driven data staging. Backend for Data Tracker app

  pythongraphqldjango+ 1graphene

  Python

  •

  Apache License 2.0

  •0•1•56•37•Updated Nov 1, 2024Nov 1, 2024

• kf-api-fhir-service

  Public
  🔥 FHIR Data Service for Kids First

  javadockerjest+ 3pytestfhir-apismile-cdr

  Python

  •

  Apache License 2.0

  •3•8•6•3•Updated Oct 31, 2024Oct 31, 2024

• kf-api-portal-reports

  Public
  📝 Generate reports based on queries built using the Kids First Portal

  TypeScript

  •

  Apache License 2.0

  •1•0•0•2•Updated Oct 31, 2024Oct 31, 2024

• c2m2-submission-process

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•3•4•Updated Oct 25, 2024Oct 25, 2024

• kf-longreads-workflow

  Public
  This is a dev-to-production repo for the Kids First Long reads pipeline

  Common Workflow Language

  •

  Apache License 2.0

  •1•1•0•1•Updated Oct 23, 2024Oct 23, 2024

• rollcall

  Public
  A service for managing indices and aliases in an elasticsearch cluster

  Java

  •

  GNU Affero General Public License v3.0

  •1•0•0•47•Updated Oct 4, 2024Oct 4, 2024

• kf-tumor-workflow

  Public
  Common Workflow Language

  •

  Apache License 2.0

  •0•2•1•0•Updated Sep 25, 2024Sep 25, 2024

• kf-jointgenotyping-workflow

  Public
  🔬 Joint genotyping workflow for Kids-First DRC

  bioinformaticscwldrc-harmonization

  Common Workflow Language

  •

  Apache License 2.0

  •1•6•0•0•Updated Sep 17, 2024Sep 17, 2024

• Kids-First-Sentieon-Joint-Cohort-Genotyping-Workflow

  Public
  Kids First and Sentieon collaboration to bring a relatively easy and affordable joint calling workflow to CAVATICA

  Common Workflow Language

  •

  Apache License 2.0

  •1•0•0•0•Updated Sep 17, 2024Sep 17, 2024

• kf-dataservice-tools

  Public
  🧮 tools for interacting with the dataservice

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• PacBio-HiFi-human-WGS-CWL

  Public
  Common Workflow Language

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• kf-persona

  Public archive
  kids-first persona implementation

  TypeScript

  •

  Apache License 2.0

  •0•0•4•0•Updated Jul 31, 2024Jul 31, 2024

• riff

  Public archive
  🚧 A Microservice for URL Shortening and sharing.

  Java

  •

  GNU Affero General Public License v3.0

  •2•0•0•26•Updated Jul 27, 2024Jul 27, 2024

• kf-annotation-tools

  Public
  This repo contains commonly share annotation tools. Meant to be generally used as a git submodule for other variant calling workflows to centralize and simplify code development and maintainance.

  Common Workflow Language

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• kf-utils-python

  Public
  🛠 Collection of reusable Python utilities related to the Kids First project

  pythonutility-librarychi+ 1kids-first

  Python

  •

  Apache License 2.0

  •0•5•1•1•Updated Jun 17, 2024Jun 17, 2024

• kf-cavatica-public-app-publisher

  Public
  This repo houses scripts and guidelines on publishing a CWL app as a public app on Cavtica

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated May 8, 2024May 8, 2024

• clovoc-ui-data-dashboard

  Public
  R

  •

  Apache License 2.0

  •1•1•2•1•Updated May 1, 2024May 1, 2024

• kf-update-dbgap-consent

  Public
  🛠 dbGaP sample consent status processor for the Kids First project

  Python

  •

  Apache License 2.0

  •0•0•4•1•Updated Apr 23, 2024Apr 23, 2024

• kf-lambda-member-update

  Public archive
  This lambda consume events from sqs and update elasticsearch member index

  lambda

  Python

  •0•0•0•1•Updated Mar 20, 2024Mar 20, 2024