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@ksumngs KSU Molecular NGS Lab

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    9 repositories

    • yavsap

      Public
      Yet Another Viral Subspecies Analysis Pipeline
      Nextflow
      •
      MIT License
      •1•2•3•1•Updated Nov 25, 2024Nov 25, 2024

    • v-met

      Public
      A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.
      bioinformaticspipelinenextflowmetagenomicsviralkraken2
      Nextflow
      •
      MIT License
      •2•3•1•1•Updated Jan 15, 2024Jan 15, 2024

    • HapLink.jl

      Public
      Viral haplotype calling by linkage disequilibrium
      Julia
      •
      MIT License
      •1•0•1•5•Updated Dec 22, 2023Dec 22, 2023

    • kraken2

      Public
      The second version of the Kraken taxonomic sequence classification system
      C++
      •
      MIT License
      •275•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • nf-modules

      Public
      nf-core-compatible Nextflow modules with a Wildcat flavor
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated May 13, 2023May 13, 2023

    • nf-test-datasets

      Public
      Toy datasets for testing our own Nextflow pipelines in the spirit of nf-core
      0•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • bam-readcount

      Public
      count DNA sequence reads in BAM files
      CMake
      •
      MIT License
      •96•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • itasserrun

      Public
      Efficiently reformat protein sequences and simulate their structures using I-TASSER
      Shell
      •
      MIT License
      •0•1•0•0•Updated Oct 20, 2021Oct 20, 2021

    • nanofilt

      Public
      Filtering and trimming of long read sequencing data
      Python
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated Feb 24, 2021Feb 24, 2021