Repositories list

• pops-core

  Public
  PoPS Core: C++ library for the Pest or Pathogen Spread Model

  simulationmodelepidemiology+ 8hacktoberfestpestpestspathogen-spreadpathogenspreadpops+ 1

  C++

  •

  GNU General Public License v2.0

  •2•6•15•5•Updated Dec 20, 2024Dec 20, 2024

• rpops

  Public
  PoPS (Pest or Pathogen Spread) R Package

  simulationpathogenmodeling+ 5pestinsectpestspopspathogen-spread

  R

  •

  GNU General Public License v3.0

  •5•11•13•3•Updated Dec 19, 2024Dec 19, 2024

• pops_cbs

  Public
  R

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• pops.sdm

  Public
  R

  •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• pops-intro-grass-notebook

  Public
  Introductory notebook for Pest or Pathogen Spread Simulation in GRASS GIS

  notebookgrasspops+ 3sudden-oak-deathbinderjupyter-notebook

  Jupyter Notebook

  •0•0•1•1•Updated Nov 18, 2024Nov 18, 2024

• r.pops.spread

  Public
  r.pops.spread - PoPS model implemented as a GRASS GIS module

  hacktoberfestpestplant-disease+ 7spreadgrass-gispopsgrass-interfacegrass-modulegrass-addonsimulation

  C++

  •

  GNU General Public License v2.0

  •0•5•0•6•Updated Nov 12, 2024Nov 12, 2024

• GIATAR-dataset

  Public
  Global Invasive and Alien Traits and Records Dataset

  Python

  •

  GNU General Public License v3.0

  •1•2•3•0•Updated Oct 21, 2024Oct 21, 2024

• PoPS-Forecasting-Platform

  Public
  Django backend and API powering popsmodel.org

  hacktoberfest

  HTML

  •

  GNU General Public License v3.0

  •0•3•25•7•Updated Sep 20, 2024Sep 20, 2024

• late_blight_model_comparison

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• strain-classifier

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• HPC_conda_PoPS

  Public
  This repo provides YAML for conda to run PoPS along with sample batch script and some explanation

  Shell

  •

  MIT License

  •0•2•0•0•Updated May 16, 2024May 16, 2024

• popsborder

  Public
  PoPS Border: Simulation of contaminated consignments and their inspections

  simulationopen-scienceborder+ 4hacktoberfestpestinspectionspathways-simulation

  Python

  •

  GNU General Public License v2.0

  •4•2•34•6•Updated Mar 11, 2024Mar 11, 2024

• r.pops.potential

  Public
  Computing infestation potential

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

• spongy_moth

  Public
  Case study for spongy moth (Lymantria dispar) formally known as gypsy moth

  R

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Mar 20, 2023Mar 20, 2023

• GRASS_FUTURES

  Public
  Urban growth model designed to capture the spatial structure of future development

  simulationurbanizationgrass-gis+ 1grass-gis-addons

  C

  •

  GNU General Public License v2.0

  •13•26•2•2•Updated Mar 8, 2023Mar 8, 2023

• PoPS-Global

  Public
  A hierarchical model for global plant insect and pathogen spread via human movement

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•3•5•0•Updated Feb 22, 2023Feb 22, 2023

• futures-model-intro-notebook

  Public
  Introduction to FUTURES urban model in GRASS GIS using Jupyter Notebook in Binder

  Jupyter Notebook

  •3•5•2•0•Updated Feb 21, 2023Feb 21, 2023

• pandemic_dashboard

  Public
  Repo for Pandemic dashboard development

  CSS

  •

  GNU General Public License v3.0

  •0•1•1•19•Updated Jan 6, 2023Jan 6, 2023

• host_map

  Public
  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 15, 2022Dec 15, 2022

• LAMP_assay_automation

  Public
  Automate processing of images from LAMP sensors

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Dec 15, 2022Dec 15, 2022

• pops-process-network

  Public
  Preprocessing script to get inputs for PoPS network model

  Python

  •

  GNU General Public License v3.0

  •1•0•2•1•Updated Nov 8, 2022Nov 8, 2022

• Manuscript--Understanding-the-genotypic-and-phenotypic-structure-of-Phytophthora-nicotianae-outbreak

  Public
  This repo contains code for processing weather data for the manuscript.

  GNU General Public License v2.0

  •0•0•0•0•Updated Nov 3, 2022Nov 3, 2022

• pops_model_api

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Oct 5, 2022Oct 5, 2022

• pynodelauncher

  Public
  Launch pleasantly parallel tasks on multiple nodes

  Python

  •

  GNU General Public License v3.0

  •3•2•0•5•Updated Apr 6, 2022Apr 6, 2022

• GEE_Daymet_temp_and_RH_via_Python

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 28, 2022Mar 28, 2022

• pandemic_hpc

  Public
  structure and scripts to run the Pandemic model on HPC

  Python

  •1•0•0•0•Updated Mar 12, 2022Mar 12, 2022

• git.treeofheaven

  Public
  Repository for code used to create Tree of Heaven host maps

  R

  •1•0•0•0•Updated Feb 1, 2022Feb 1, 2022

• pypops

  Public
  PoPS (Pest or Pathogen Spread) Model Python Interface

  C++

  •

  GNU General Public License v3.0

  •0•1•2•3•Updated Oct 28, 2021Oct 28, 2021

• pops_weather_coefficient

  Public
  For creation of weather coefficients for the PoPS Forecasting Platform

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 26, 2021May 26, 2021

• par_scripts_on_hpc

  Public
  Scripts to run parallelization on HPCs

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated May 15, 2021May 15, 2021