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144 repositories
coproid
Public- A single cell transcriptomics pipeline for QC, integration and making the data presentable
- Call and score variants from WGS/WES of rare disease patients.
- A bioinformatics pipeline to phase and impute genetic data
- Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
nascent
Public- Parallelised and automated construction of metagenomic classifier databases of different tools
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
modules-template
Publicspatialvi
PublicPipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.- Compare the quality of multiple genomes, along with their annotations.
reportho
Publicviralrecon
PublicAssembly and intrahost/low-frequency variant calling for viral samples