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scvi-tools
PublicDeep probabilistic analysis of single-cell and spatial omics data- Annotated data.
- Single-cell analysis in Python. Scales to >1M cells.
- Spatial Single Cell Analysis in Python
scirpy
Publicecosystem-packages
PublicRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)rapids_singlecell
PublicRapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.prelude-runner
Publicscverse-tutorials
Publicspatialdata-plot
Publicscvi-tutorials
Publiccookiecutter-scverse
Publicpytometry
Publicnapari-spatialdata
PublicInteractive visualization of spatial omics dataplotting_api
Publicgenomic-features
Public- Example repository generated from https://github.com/scverse/cookiecutter-scverse. This repo is updated automatically to match the latest version of the template.
integration-testing
PublicanndataR
Publicmudata
PublicMultimodal Data (.h5mu) implementation for Pythonmuon
Publicmuon is a multimodal omics Python frameworkpertpy
PublicPerturbation Analysis in the scverse ecosystem.spatialdata-notebooks
Publicsimple-scvi
PublicMuon.jl
Publicbenchmark
Public