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    26 repositories

    • mimic

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • fitness

      Public
      analysis related to the FITNESS Study at OSU
      cancermicrobiomeagingimmunotherapyphysical-activitytoxicity
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • lab-logistics

      Public
      Coding and structure conventions in the lab
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • tmesig

      Public
      Tumor Microenvironment expression signatures
      R
      •0•0•6•0•Updated Oct 1, 2024Oct 1, 2024

    • modbio

      Public
      Power, data processing and analyses related to the "modbio" companion to the INSIGNA clinical trial
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • atbac

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • exorien-melio

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jun 27, 2024Jun 27, 2024

    • exorien-recrad

      Public
      Code for processing and analyses associated with the recrad project
      MIT License
      •0•0•0•0•Updated May 20, 2024May 20, 2024

    • exotic

      Public
      Make functions utilized in the exotic pipeline available through package format
      R
      •
      MIT License
      •0•2•0•0•Updated May 1, 2024May 1, 2024

    • microsig

      Public
      This package contains functions to calculate microbe signatures, particularly from bugsigdb inputs.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • mhealth-iit

      Public
      R Shiny app to support the use of mobile health data in academic clinical trials. This tool enables one to obtain consent to share user's FitBit data with the research team.
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • exotic-manuscript

      Public
      code related to data processing and analysis for exotic manuscript
      HTML
      •
      MIT License
      •0•2•0•1•Updated Jul 27, 2023Jul 27, 2023

    • mt.surv

      Public
      R package for a multi-threshold survival area analysis
      R
      •
      Other
      •0•0•0•0•Updated Apr 28, 2023Apr 28, 2023

    • exohnsc

      Public
      Code related to the study of the tumor microbiome and head and neck cancer
      MIT License
      •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • co-mo-io

      Public
      The effect of co-morbidities on immunotherapy response.
      MIT License
      •0•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • seqMethods

      Public
      Spakowicz lab methods for sequencing microbiome & other samples
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2021Oct 12, 2021

    • SCF

      Public
      HTML
      •2•0•0•0•Updated Mar 22, 2021Mar 22, 2021

    • co-med-io

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • mageio

      Public
      Microbiome, Aging and Immunotherapy
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • aacrmv20

      Public
      Intratumoral microbes correlate with tumor-infiltrating lymphocytes in lung cancer RNAseq
      MIT License
      •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • diacomp20

      Public
      Code to support the study of diabetic complications using preclinical models
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • nktcan

      Public
      Analyses and calculations related to the study of NKTcells in cancer
      HTML
      •0•0•0•0•Updated Jun 25, 2020Jun 25, 2020

    • decoasthma

      Public
      Code to reproduce the analyses described in the manuscript, "Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients"
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 21, 2020Mar 21, 2020

    • clinical-trial-end-date

      Public
      Script for predicting the completion date of clinical trials
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 16, 2020Mar 16, 2020

    • Useful-Numbers

      Public
      0•0•0•0•Updated Jan 29, 2020Jan 29, 2020

    • nlr-io

      Public
      Analysis associated with the publication, "Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers" DOI : 10.1007/s00432-019-02982-4
      machine-learningnlrimmunotherapyneutrophil
      MIT License
      •0•0•0•0•Updated Sep 11, 2019Sep 11, 2019