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@transmart TranSMART Project

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    39 repositories

    • transmart-base-ui

      Public
      Boilerplate code for tranSMART UI
      JavaScript
      •3•0•0•0•Updated Jul 15, 2020Jul 15, 2020

    • SmartR

      Public
      SmartR
      JavaScript
      •
      Apache License 2.0
      •15•13•0•0•Updated Dec 12, 2019Dec 12, 2019

    • transmartApp

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
      JavaScript
      •
      GNU General Public License v3.0
      •74•71•1•0•Updated Jul 20, 2018Jul 20, 2018

    • transmart-data

      Public
      Tools for managing tranSMART's database
      PLSQL
      •
      GNU General Public License v3.0
      •46•3•0•1•Updated Jun 7, 2018Jun 7, 2018

    • transmart-test

      Public
      Functional tests for tranSMART
      Groovy
      •4•1•0•0•Updated May 2, 2018May 2, 2018

    • transmart-core-db

      Public
      TranSMART Core
      Groovy
      •
      GNU General Public License v3.0
      •30•1•0•2•Updated Mar 12, 2018Mar 12, 2018

    • blend4j-plugin

      Public
      blend4j-plugin is a grails plugin to access galaxy.
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • Rmodules

      Public
      A R statistical analysis module plugin for tranSMART
      Groovy
      •
      Other
      •34•5•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-xnat-viewer

      Public
      Connector to link tranSMART to an XNAT server
      Groovy
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-xnat-importer-plugin

      Public
      Groovy
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-rest-api

      Public
      HTTP available tranSMART RESTful API
      Groovy
      •
      Other
      •12•3•0•1•Updated Mar 12, 2018Mar 12, 2018

    • dalliance-plugin

      Public
      JavaScript
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-mydas

      Public
      Java
      •5•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-metacore-plugin

      Public
      The tranSMART plugin Metacore
      Groovy
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-gwas-plink

      Public
      Plink integration for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-legacy-db

      Public
      Contains the Grails domain declarations of the legacy transmart schema
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-extensions

      Public
      Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
      Java
      •10•1•0•0•Updated Mar 12, 2018Mar 12, 2018

    • folder-management-plugin

      Public
      The transmart (and grails) plugin that contains the folder-management elements.
      Groovy
      •17•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • tranSMART-ETL

      Public
      tranSMART ETL pipelines and configurations
      Groovy
      •26•11•0•0•Updated Mar 12, 2018Mar 12, 2018

    • Scripts

      Public
      A collection of scripts for managing all the tranSMART Foundation repositories
      Shell
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Feb 19, 2018Feb 19, 2018

    • transmart-gwas-plugin

      Public
      The transmart (and grails) plugin that contains the GWAS elements.
      PLSQL
      •14•0•0•0•Updated Jan 17, 2018Jan 17, 2018

    • transmart-core-api

      Public
      constraints
      Groovy
      •
      GNU General Public License v3.0
      •15•1•0•0•Updated Jan 17, 2018Jan 17, 2018

    • RInterface

      Public
      A R module with packaged functions to query the tranSMART database directly
      R
      •
      Other
      •9•4•1•1•Updated Oct 12, 2017Oct 12, 2017

    • IpaApi

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • GWAVA

      Public
      Genome Wide Association Study Visualizer (from Pfizer)
      HTML
      •2•0•0•0•Updated Oct 18, 2016Oct 18, 2016

    • mydas

      Public
      mydas is an easy-to-extend Java DAS server framework.
      Java
      •2•0•0•0•Updated Oct 17, 2016Oct 17, 2016

    • transmart-ICE

      Public
      ICE tool for transmart ETL (formerly FCL4tranSMART)
      Java
      •1•1•0•0•Updated Jul 19, 2016Jul 19, 2016

    • transmart-batch

      Public
      tranSMART pipeline alternative to ETL, using Spring Batch
      Groovy
      •14•0•0•0•Updated Jul 19, 2016Jul 19, 2016

    • transmart-horde

      Public
      This contains code for a prototype of "federation"
      Groovy
      •0•0•0•0•Updated Jun 27, 2016Jun 27, 2016

    • transmartApp-Config

      Public
      external configuration files for tranSMART application
      Groovy
      •3•4•1•0•Updated May 26, 2016May 26, 2016