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    21 repositories

    • FOLD

      Public
      Python
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • dasa

      Public
      Differential ATAC-Seq analysis
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

    • submit

      Public
      Generalized submit command for slurm / moabs
      pythonslurm-clusterpbs-torque
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Aug 8, 2024Aug 8, 2024

    • csvutils

      Public
      Utilities for working with delimited (CSV) files.
      pythoncsv
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 6, 2024Aug 6, 2024

    • BIutils

      Public
      Utilities used by several uf-icbr-bioinformatics packages
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • cfastools

      Public
      Small C utilities for fasta/fastq files
      C
      •
      MIT License
      •0•1•0•0•Updated Aug 1, 2024Aug 1, 2024

    • methylmapper

      Public
      Python
      •0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • ICBR-NGS-tools

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 4, 2024Feb 4, 2024

    • bioscripts

      Public
      A collection of stand-alone scripts for bioinformatics
      pythonbioinformatics
      Python
      •
      GNU General Public License v3.0
      •2•4•0•0•Updated Jul 19, 2023Jul 19, 2023

    • GenoMaker

      Public
      Declarative language for complex genomic analysis
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

    • tenX

      Public
      User-friendly script to run the cellranger/seurat analysis pipeline for 10X scRNA-seq experiments
      Shell
      •0•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • biocontainers

      Public
      Makefile
      •0•0•0•0•Updated Jun 6, 2021Jun 6, 2021

    • Sugarcane-MgCh

      Public
      Python
      •0•0•0•0•Updated Mar 1, 2021Mar 1, 2021

    • ngssim

      Public
      A suite of simulators for NGS data
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2020Mar 9, 2020

    • cellClassifier

      Public
      Automatic classification of clusters from single-cell RNA-Seq experiments
      Python
      •0•1•0•0•Updated Aug 28, 2019Aug 28, 2019

    • uf-icbr-bioinformatics.github.io

      Public
      pythonbioinformaticsscripts
      Ruby
      •0•0•0•0•Updated Nov 15, 2018Nov 15, 2018

    • fastascripts

      Public
      This repository contains scripts for dealing with FASTA files and identifies external scripts as well
      pythonjavabioinformaticsfasta
      Python
      •0•1•0•0•Updated Nov 15, 2018Nov 15, 2018

    • polyplot

      Public
      Command-line tool to generate useful plots
      pythonbioinformaticsplot
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 30, 2018Oct 30, 2018

    • sqlighter

      Public
      Improved sqlite3 client
      pythonsqlite3
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 19, 2018Oct 19, 2018

    • soi

      Public
      cintersection
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 1, 2018Sep 1, 2018

    • ba3p

      Public
      Bacterial alignment, assembly, and annotation pipelines
      Python
      •0•1•0•0•Updated Apr 5, 2016Apr 5, 2016