lr-kallisto:
- Threshold for rate of unmapped kmers per read can be set via --thresholds (this option wasn't functional previously)
New pseudoalignment features (only for exploratory/research use), including:
- Can use --no-jump to skip the pseudoalignment jumping logic
- Can use --union to do set union rather than set intersection over equivalence classes
- Settings --priors when running quant-tcc now works