10x feature barcode map hotfix

pachterlab · Sep 24, 2021 · 5d9a9f7 · 5d9a9f7
1 parent 6036007
commit 5d9a9f7
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Showing 2 changed files with 7 additions and 1 deletion.
diff --git a/kb_python/utils.py b/kb_python/utils.py
@@ -336,7 +336,7 @@ def copy_map(technology, out_dir):
     :rtype: str
     """
     technology = TECHNOLOGIES_MAPPING[technology.upper()]
-    archive_path = technology.chemistry.whitelist_path
+    archive_path = technology.chemistry.feature_map_path
     map_path = os.path.join(
         out_dir,
         os.path.splitext(os.path.basename(archive_path))[0]

diff --git a/tests/test_utils.py b/tests/test_utils.py
@@ -218,3 +218,9 @@ def test_move_file(self):
     def test_copy_whitelist(self):
         whitelist_path = utils.copy_whitelist('10xv1', self.temp_dir)
         self.assertTrue(os.path.exists(whitelist_path))
+
+    def test_copy_map(self):
+        map_path = utils.copy_map('10xv3', self.temp_dir)
+        self.assertTrue(os.path.exists(map_path))
+        with open(map_path, 'r') as f:
+            self.assertIn('\t', f.readline())