Bump CUDA from 11.8 to 12.0 (#514)

* Bump CUDA from 11.8 to 12.0

Update Pytorch, Torchvision and Tensorflow to use CUDA 12.0 builds. Also bumped pytorch from 2.0.0 to 2.1.0, torchvision from 0.15.1 to 0.16.1 and tensorflow from 2.14.0 to 2.15.0 because lower versions only has CUDA 11.8 on conda-forge.

* Pin to flax>=0.8.0

* Set with-cuda=12.0 flag on conda-lock lock

* Set CONDA_OVERRIDE_CUDA environment variable

Xref https://conda-forge.org/docs/maintainer/knowledge_base.html#cuda-builds

* Regenerate conda-lock files for ml-notebook and pytorch-notebook

Manually re-locking

* Delete conda-lock.yml files for ml-notebook and pytorch-notebook

* Revert "Delete conda-lock.yml files for ml-notebook and pytorch-notebook"

This reverts commit 7658847.

* Bump conda-lock from 2.3 to 2.5

Bumps [conda-lock](https://github.com/conda/conda-lock) from 2.3.0 to 2.5.5.
- [Release notes](https://github.com/conda/conda-lock/releases)
- [Commits](conda/conda-lock@v2.3.0...v2.5.5)

* Bump conda from 23.11.0 to 24.1.2

Bumps [conda](https://github.com/conda/conda) from 23.11.0 to 24.1.2.
- [Release notes](https://github.com/conda/conda/releases)
- [Changelog](https://github.com/conda/conda/blob/master/CHANGELOG.md)
- [Commits](conda/conda@23.11.0...24.1.2)

* Try manually removing cudatoolkit from conda-lock.yml

Xref mamba-org/mamba#3120

* Revert "Set CONDA_OVERRIDE_CUDA environment variable"

This reverts commit 4d26a19.

* Try removing asterisk in front of cuda120 build string

* Depend on cuda-version=12.0 instead of matching cuda120 build string

* Increase conda-lock timeout minutes from 20 to 30min

* [condalock-command] autogenerated conda-lock files

* Revert "[condalock-command] autogenerated conda-lock files"

This reverts commit 12da355.

* Keep cuda120 build string regex pattern

Partial revert of 537c27f

* Set cuda-version pin as >=12.0 instead of =12.0

Pin minimum version of CUDA to 12.0, instead of specifying exact pin on 12.0

* Add virtual-packages.yml to ml-notebook and pytorch-notebook

Xref https://github.com/conda/conda-lock/tree/v2.5.7?tab=readme-ov-file#--virtual-package-spec

* [condalock-command] autogenerated conda-lock files

---------

Co-authored-by: pangeo-bot <pangeo-bot@users.noreply.github.com>

base-notebook/conda-linux-64.lock

@@ -35,7 +35,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.cond
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0
 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda#c0f3abb4a16477208bbd43a39bd56f18
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda#ba01a2fef8a67913acc4ab8da101dd27
 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036
 https://conda.anaconda.org/conda-forge/linux-64/snappy-1.2.0-hdb0a2a9_1.conda#843bbb8ace1d64ac50d64639ff38b014
 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.conda#2c80dc38fface310c9bd81b17037fee5
@@ -213,7 +213,7 @@ https://conda.anaconda.org/conda-forge/noarch/jupyter_server_terminals-0.5.3-pyh
 https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-storage-2.24.0-h3d9a0c8_0.conda#a731371833a7b1ab3a87be0fe7e6235a
 https://conda.anaconda.org/conda-forge/noarch/mako-1.3.5-pyhd8ed1ab_0.conda#29fddbfa0e2361636a98de4f46ead2ac
 https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.4-py311h64a7726_0.conda#a502d7aad449a1206efb366d6a12c52d
-https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda#a30144e4156cdbb236f99ebb49828f8b
+https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda#20ce56db6c7aae9e6654b358ecbfc470
 https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-2.0.30-py311h331c9d8_0.conda#2454969ff3b8306a0b1c832f449dc50f
 https://conda.anaconda.org/conda-forge/noarch/stack_data-0.6.2-pyhd8ed1ab_0.conda#e7df0fdd404616638df5ece6e69ba7af
 https://conda.anaconda.org/conda-forge/noarch/alembic-1.13.1-pyhd8ed1ab_1.conda#7b7b0062b0de9f3f71502d31215fcbbb

base-notebook/conda-lock.yml

@@ -2587,10 +2587,10 @@ package:
   dependencies:
     ca-certificates: ''
     libgcc-ng: '>=12'
-  url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda
   hash:
-    md5: c0f3abb4a16477208bbd43a39bd56f18
-    sha256: fdbf05e4db88c592366c90bb82e446edbe33c6e49e5130d51c580b2629c0b5d5
+    md5: ba01a2fef8a67913acc4ab8da101dd27
+    sha256: addce4c7b00d8b8be6e46a3ba783e1ce56d470aa6399ad91a7703bb844a6be9c
   category: main
   optional: false
 - name: orc
@@ -3181,7 +3181,7 @@ package:
   category: main
   optional: false
 - name: requests
-  version: 2.31.0
+  version: 2.32.1
   manager: conda
   platform: linux-64
   dependencies:
@@ -3190,10 +3190,10 @@ package:
     idna: '>=2.5,<4'
     python: '>=3.7'
     urllib3: '>=1.21.1,<3'
-  url: https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda
+  url: https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda
   hash:
-    md5: a30144e4156cdbb236f99ebb49828f8b
-    sha256: 9f629d6fd3c8ac5f2a198639fe7af87c4db2ac9235279164bfe0fcb49d8c4bad
+    md5: 20ce56db6c7aae9e6654b358ecbfc470
+    sha256: 6c64bb15baf632e99c39099cd7ba9201b258a6323b8b47c8a902d0932813ff65
   category: main
   optional: false
 - name: rfc3339-validator

base-notebook/packages.txt

@@ -215,7 +215,7 @@ pyzmq==26.0.3
 re2==2023.09.01
 readline==8.2
 referencing==0.35.1
-requests==2.31.0
+requests==2.32.1
 rfc3339-validator==0.1.4
 rfc3986-validator==0.1.1
 rpds-py==0.18.1