From 6d4c2abcc5f145135e1d3213043b406fdf058793 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Wed, 22 May 2024 03:30:26 +1200 Subject: [PATCH] Bump CUDA from 11.8 to 12.0 (#514) * Bump CUDA from 11.8 to 12.0 Update Pytorch, Torchvision and Tensorflow to use CUDA 12.0 builds. Also bumped pytorch from 2.0.0 to 2.1.0, torchvision from 0.15.1 to 0.16.1 and tensorflow from 2.14.0 to 2.15.0 because lower versions only has CUDA 11.8 on conda-forge. * Pin to flax>=0.8.0 * Set with-cuda=12.0 flag on conda-lock lock * Set CONDA_OVERRIDE_CUDA environment variable Xref https://conda-forge.org/docs/maintainer/knowledge_base.html#cuda-builds * Regenerate conda-lock files for ml-notebook and pytorch-notebook Manually re-locking * Delete conda-lock.yml files for ml-notebook and pytorch-notebook * Revert "Delete conda-lock.yml files for ml-notebook and pytorch-notebook" This reverts commit 76588478e48bc2ab25f691dc7af3a36e39a98105. * Bump conda-lock from 2.3 to 2.5 Bumps [conda-lock](https://github.com/conda/conda-lock) from 2.3.0 to 2.5.5. - [Release notes](https://github.com/conda/conda-lock/releases) - [Commits](https://github.com/conda/conda-lock/compare/v2.3.0...v2.5.5) * Bump conda from 23.11.0 to 24.1.2 Bumps [conda](https://github.com/conda/conda) from 23.11.0 to 24.1.2. - [Release notes](https://github.com/conda/conda/releases) - [Changelog](https://github.com/conda/conda/blob/master/CHANGELOG.md) - [Commits](https://github.com/conda/conda/compare/23.11.0...24.1.2) * Try manually removing cudatoolkit from conda-lock.yml Xref https://github.com/mamba-org/mamba/issues/3120 * Revert "Set CONDA_OVERRIDE_CUDA environment variable" This reverts commit 4d26a191867cf378f73588c34e2a1bce0900ad06. * Try removing asterisk in front of cuda120 build string * Depend on cuda-version=12.0 instead of matching cuda120 build string * Increase conda-lock timeout minutes from 20 to 30min * [condalock-command] autogenerated conda-lock files * Revert "[condalock-command] autogenerated conda-lock files" This reverts commit 12da355b4c6150482c865350cc79d4a11b7d106c. * Keep cuda120 build string regex pattern Partial revert of 537c27fd6b0034987583142310762dbd82eee258 * Set cuda-version pin as >=12.0 instead of =12.0 Pin minimum version of CUDA to 12.0, instead of specifying exact pin on 12.0 * Add virtual-packages.yml to ml-notebook and pytorch-notebook Xref https://github.com/conda/conda-lock/tree/v2.5.7?tab=readme-ov-file#--virtual-package-spec * [condalock-command] autogenerated conda-lock files --------- Co-authored-by: pangeo-bot --- base-notebook/conda-linux-64.lock | 4 +- base-notebook/conda-lock.yml | 14 +- base-notebook/packages.txt | 2 +- ml-notebook/conda-linux-64.lock | 270 ++-- ml-notebook/conda-lock.yml | 1807 ++++++++++++++++--------- ml-notebook/environment.yml | 5 +- ml-notebook/packages.txt | 188 +-- ml-notebook/virtual-packages.yml | 4 + pangeo-notebook/conda-linux-64.lock | 6 +- pangeo-notebook/conda-lock.yml | 22 +- pangeo-notebook/packages.txt | 4 +- pytorch-notebook/conda-linux-64.lock | 53 +- pytorch-notebook/conda-lock.yml | 349 +++-- pytorch-notebook/environment.yml | 5 +- pytorch-notebook/packages.txt | 21 +- pytorch-notebook/virtual-packages.yml | 4 + 16 files changed, 1792 insertions(+), 966 deletions(-) create mode 100644 ml-notebook/virtual-packages.yml create mode 100644 pytorch-notebook/virtual-packages.yml diff --git a/base-notebook/conda-linux-64.lock b/base-notebook/conda-linux-64.lock index 8b60b5c7..20900fb6 100644 --- a/base-notebook/conda-linux-64.lock +++ b/base-notebook/conda-linux-64.lock @@ -35,7 +35,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.cond https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69 -https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda#c0f3abb4a16477208bbd43a39bd56f18 +https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda#ba01a2fef8a67913acc4ab8da101dd27 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036 https://conda.anaconda.org/conda-forge/linux-64/snappy-1.2.0-hdb0a2a9_1.conda#843bbb8ace1d64ac50d64639ff38b014 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.conda#2c80dc38fface310c9bd81b17037fee5 @@ -213,7 +213,7 @@ https://conda.anaconda.org/conda-forge/noarch/jupyter_server_terminals-0.5.3-pyh https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-storage-2.24.0-h3d9a0c8_0.conda#a731371833a7b1ab3a87be0fe7e6235a https://conda.anaconda.org/conda-forge/noarch/mako-1.3.5-pyhd8ed1ab_0.conda#29fddbfa0e2361636a98de4f46ead2ac https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.4-py311h64a7726_0.conda#a502d7aad449a1206efb366d6a12c52d -https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda#a30144e4156cdbb236f99ebb49828f8b +https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda#20ce56db6c7aae9e6654b358ecbfc470 https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-2.0.30-py311h331c9d8_0.conda#2454969ff3b8306a0b1c832f449dc50f https://conda.anaconda.org/conda-forge/noarch/stack_data-0.6.2-pyhd8ed1ab_0.conda#e7df0fdd404616638df5ece6e69ba7af https://conda.anaconda.org/conda-forge/noarch/alembic-1.13.1-pyhd8ed1ab_1.conda#7b7b0062b0de9f3f71502d31215fcbbb diff --git a/base-notebook/conda-lock.yml b/base-notebook/conda-lock.yml index ac87f68a..493f6057 100644 --- a/base-notebook/conda-lock.yml +++ b/base-notebook/conda-lock.yml @@ -2587,10 +2587,10 @@ package: dependencies: ca-certificates: '' libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda hash: - md5: c0f3abb4a16477208bbd43a39bd56f18 - sha256: fdbf05e4db88c592366c90bb82e446edbe33c6e49e5130d51c580b2629c0b5d5 + md5: ba01a2fef8a67913acc4ab8da101dd27 + sha256: addce4c7b00d8b8be6e46a3ba783e1ce56d470aa6399ad91a7703bb844a6be9c category: main optional: false - name: orc @@ -3181,7 +3181,7 @@ package: category: main optional: false - name: requests - version: 2.31.0 + version: 2.32.1 manager: conda platform: linux-64 dependencies: @@ -3190,10 +3190,10 @@ package: idna: '>=2.5,<4' python: '>=3.7' urllib3: '>=1.21.1,<3' - url: https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda hash: - md5: a30144e4156cdbb236f99ebb49828f8b - sha256: 9f629d6fd3c8ac5f2a198639fe7af87c4db2ac9235279164bfe0fcb49d8c4bad + md5: 20ce56db6c7aae9e6654b358ecbfc470 + sha256: 6c64bb15baf632e99c39099cd7ba9201b258a6323b8b47c8a902d0932813ff65 category: main optional: false - name: rfc3339-validator diff --git a/base-notebook/packages.txt b/base-notebook/packages.txt index add11ff1..42be89ca 100644 --- a/base-notebook/packages.txt +++ b/base-notebook/packages.txt @@ -215,7 +215,7 @@ pyzmq==26.0.3 re2==2023.09.01 readline==8.2 referencing==0.35.1 -requests==2.31.0 +requests==2.32.1 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rpds-py==0.18.1 diff --git a/ml-notebook/conda-linux-64.lock b/ml-notebook/conda-linux-64.lock index d29b3010..2ab22346 100644 --- a/ml-notebook/conda-linux-64.lock +++ b/ml-notebook/conda-linux-64.lock @@ -1,11 +1,11 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 6917603170271e5bedf6ea0a4ca41d2a1497b08009f5b3b368e6e17e0514e282 +# input_hash: 00c54fa6d3a2c7c58c39ad9fd406d4521578822a5d765644697a8534e9ddbb42 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/_py-xgboost-mutex-2.0-gpu_0.tar.bz2#7702188077361f43a4d61e64c694f850 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef -https://conda.anaconda.org/conda-forge/noarch/cuda-version-11.8-h70ddcb2_3.conda#670f0e1593b8c1d84f57ad5fe5256799 +https://conda.anaconda.org/conda-forge/noarch/cuda-version-12.4-h3060b56_3.conda#c9a3fe8b957176e1a8452c6f3431b0d8 https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45 https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2#34893075a5c9e55cdafac56607368fc6 https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2#4d59c254e01d9cde7957100457e2d5fb @@ -17,10 +17,12 @@ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h55db66e_0 https://conda.anaconda.org/conda-forge/linux-64/libboost-headers-1.85.0-ha770c72_1.conda#012455a6eddcbf487ef0ddd1715f0b80 https://conda.anaconda.org/conda-forge/noarch/libgcc-devel_linux-64-12.3.0-h0223996_107.conda#851e9651c9e4cd5dc19f80398eba9a1c https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_7.conda#53ebd4c833fa01cb2c6353e99f905406 -https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-mpich.tar.bz2#c1fcff3417b5a22bbc4cf6e8c23648cf https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.12-hd8ed1ab_0.conda#d8d7293c5b37f39b2ac32940621c6592 +https://conda.anaconda.org/conda-forge/noarch/pybind11-abi-4-hd8ed1ab_3.tar.bz2#878f923dd6acc8aeb47a75da6c4098be https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d786502c97404c94d7d58d258a445a65 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 +https://conda.anaconda.org/conda-forge/linux-64/cuda-crt-tools-12.4.131-ha770c72_1.conda#fabf89c3025fd356c563396fd50672f9 +https://conda.anaconda.org/conda-forge/noarch/cuda-cudart_linux-64-12.4.127-h85509e4_2.conda#329163110a96514802e9e64d971edf43 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_7.conda#abf3fec87c2563697defa759dec3d639 https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.12-he073ed8_17.conda#595db67e32b276298ff3d94d07d47fbf @@ -30,11 +32,15 @@ https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2# https://conda.anaconda.org/conda-forge/linux-64/binutils-2.40-h4852527_0.conda#a05c7712be80622934f7011e0a1d43fc https://conda.anaconda.org/conda-forge/linux-64/binutils_linux-64-2.40-hdade7a5_3.conda#2d9a60578bc28469d9aeef9aea5520c3 https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_7.conda#72ec1b1b04c4d15d4204ece1ecea5978 -https://conda.anaconda.org/conda-forge/linux-64/aom-3.7.1-h59595ed_0.conda#504e70332b8322cda93b7bceb5925fca -https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.0-hd590300_0.conda#71b89db63b5b504e7afc8ad901172e1e +https://conda.anaconda.org/conda-forge/linux-64/aom-3.8.2-h59595ed_0.conda#625e1fed28a5139aed71b3a76117ef84 +https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.10-hd590300_0.conda#93729f7a54b25cb135ac2b67ea3a7603 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f -https://conda.anaconda.org/conda-forge/linux-64/cudatoolkit-11.8.0-h4ba93d1_13.conda#eb43f5f1f16e2fad2eba22219c3e499b +https://conda.anaconda.org/conda-forge/linux-64/charls-2.4.2-h59595ed_0.conda#4336bd67920dd504cd8c6761d6a99645 +https://conda.anaconda.org/conda-forge/linux-64/cuda-cudart-12.4.127-he02047a_2.conda#a748faa52331983fc3adcc3b116fe0e4 +https://conda.anaconda.org/conda-forge/linux-64/cuda-nvrtc-12.4.127-he02047a_2.conda#80baf6262f4a1a0dde42d85aaa393402 +https://conda.anaconda.org/conda-forge/linux-64/cuda-nvtx-12.4.127-he02047a_2.conda#656a004b6e44f50ce71c65cab0d429b4 +https://conda.anaconda.org/conda-forge/linux-64/cuda-nvvm-tools-12.4.131-h59595ed_1.conda#e08da6770712ca8a8d0ba79de7cdb87f https://conda.anaconda.org/conda-forge/linux-64/dav1d-1.2.1-hd590300_0.conda#418c6ca5929a611cbd69204907a83995 https://conda.anaconda.org/conda-forge/linux-64/flatbuffers-23.5.26-h59595ed_1.conda#913a1c6fd00b66f33392a129e835ceca https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8 @@ -46,24 +52,29 @@ https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-h59595ed_1.conda#e358c https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h59595ed_1003.conda#f87c7b7c2cb45f323ffbce941c78ab7c https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff https://conda.anaconda.org/conda-forge/linux-64/json-c-0.17-h7ab15ed_0.conda#9961b1f100c3b6852bd97c9233d06979 +https://conda.anaconda.org/conda-forge/linux-64/jxrlib-1.1-hd590300_3.conda#5aeabe88534ea4169d4c49998f293d6c https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3 https://conda.anaconda.org/conda-forge/linux-64/lame-3.100-h166bdaf_1003.tar.bz2#a8832b479f93521a9e7b5b743803be51 https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2#76bbff344f0134279f225174e9064c8f -https://conda.anaconda.org/conda-forge/linux-64/libabseil-20230125.3-cxx17_h59595ed_0.conda#d1db1b8be7c3a8983dcbbbfe4f0765de +https://conda.anaconda.org/conda-forge/linux-64/libabseil-20230802.1-cxx17_h59595ed_0.conda#2785ddf4cb0e7e743477991d64353947 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-h661eb56_2.conda#dd197c968bf9760bba0031888d431ede -https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.0.9-h166bdaf_9.conda#61641e239f96eae2b8492dc7e755828c +https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.1.0-hd590300_1.conda#aec6c91c7371c26392a06708a73c70e5 https://conda.anaconda.org/conda-forge/linux-64/libcrc32c-1.1.2-h9c3ff4c_0.tar.bz2#c965a5aa0d5c1c37ffc62dff36e28400 +https://conda.anaconda.org/conda-forge/linux-64/libcufft-11.2.1.3-he02047a_2.conda#d2641a67c207946ef96f1328c4a8e8ed +https://conda.anaconda.org/conda-forge/linux-64/libcurand-10.3.5.147-he02047a_2.conda#9c4886d513fd477df88d411cd274c202 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e64d5a4d49854ebc12469caa8c4138f959cb32f43a1541a358a6db4c406e8f9b category: main optional: false - name: tiledb - version: 2.18.2 + version: 2.20.0 manager: conda platform: linux-64 dependencies: + azure-core-cpp: '>=1.10.3,<1.10.4.0a0' + azure-storage-blobs-cpp: '>=12.10.0,<12.10.1.0a0' + azure-storage-common-cpp: '>=12.5.0,<12.5.1.0a0' bzip2: '>=1.0.8,<2.0a0' + libabseil: '>=20230802.1,<20230803.0a0' + libcurl: '>=8.5.0,<9.0a0' libgcc-ng: '>=12' + libgoogle-cloud: '>=2.12.0,<2.13.0a0' libstdcxx-ng: '>=12' - libxml2: '>=2.12.1,<3.0.0a0' + libxml2: '>=2.12.5,<3.0a0' libzlib: '>=1.2.13,<1.3.0a0' lz4-c: '>=1.9.3,<1.10.0a0' - openssl: '>=3.2.0,<4.0a0' + openssl: '>=3.2.1,<4.0a0' zstd: '>=1.5.5,<1.6.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.18.2-h99f50a1_1.conda + url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.20.0-h4386cac_0.conda hash: - md5: 68c1b90224a38f6a8926140340c28bb3 - sha256: 59b8ffdff6ed696cd1a7cc84f3fe0bc43f540ae45032b654fc3c7edd6bce2ddf + md5: 20101f907b5fab4089b034f827e01b91 + sha256: abc460ddf0205dfbeb987678ca882fedcf152d91fbfe7acba2a46c10a306d9cd category: main optional: false - name: tiledb-py - version: 0.24.0 + version: 0.26.0 manager: conda platform: linux-64 dependencies: @@ -9924,11 +10465,11 @@ package: packaging: '' python: '>=3.11,<3.12.0a0' python_abi: 3.11.* - tiledb: '>=2.18.2,<2.19.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-py-0.24.0-py311h99df8de_1.conda + tiledb: '>=2.20.0,<2.21.0a0' + url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-py-0.26.0-py311h596c87e_1.conda hash: - md5: 9e2e9bee855b7cb2433d54cec79e1ee9 - sha256: 7aa560fa42270b823078f91337f39ebd46a8ae6041f96ad39574ead26c44ccf9 + md5: 75f843bdce448a8a531cca4724c3f171 + sha256: 88612642767c7663f37e6557fef01992f4080af1f41dbd0024ff4dbf38685487 category: main optional: false - name: timezonefinder @@ -10258,18 +10799,18 @@ package: category: main optional: false - name: ucx - version: 1.14.1 + version: 1.15.0 manager: conda platform: linux-64 dependencies: + cuda-cudart: '>=12.0.107,<13.0a0' libgcc-ng: '>=12' - libnuma: '>=2.0.16,<3.0a0' libstdcxx-ng: '>=12' - rdma-core: '>=28.9,<29.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/ucx-1.14.1-h64cca9d_5.conda + rdma-core: '>=51.0' + url: https://conda.anaconda.org/conda-forge/linux-64/ucx-1.15.0-hda83522_8.conda hash: - md5: 39aa3b356d10d7e5add0c540945a0944 - sha256: a62f3fb56849dc37270f9078e1c8ba32328bc3ba4d32cf1f7dace48b431d5abe + md5: 1262131747a950f88daea77b96937cb8 + sha256: 6caa77cd8b84735eef071b15d2746ffaab6bec74e584144d5cde5a30ea33315b category: main optional: false - name: ujson @@ -11123,6 +11664,20 @@ package: sha256: bc9aaee39e7be107d7daff237435dfd8f791aca460a98583a36a263615205262 category: main optional: false +- name: zfp + version: 1.0.1 + manager: conda + platform: linux-64 + dependencies: + _openmp_mutex: '>=4.5' + libgcc-ng: '>=12' + libstdcxx-ng: '>=12' + url: https://conda.anaconda.org/conda-forge/linux-64/zfp-1.0.1-h59595ed_0.conda + hash: + md5: fd486bffbf0d6841cf1456a8f2e3a995 + sha256: 52c3bb8ab48892a2851e84764b0d35589434aebebe7941d44d9aeffde53c26d3 + category: main + optional: false - name: zict version: 3.0.0 manager: conda @@ -11160,6 +11715,18 @@ package: sha256: 9887a04d7e7cb14bd2b52fa01858f05a6d7f002c890f618d9fcd864adbfecb1b category: main optional: false +- name: zlib-ng + version: 2.0.7 + manager: conda + platform: linux-64 + dependencies: + libgcc-ng: '>=12' + url: https://conda.anaconda.org/conda-forge/linux-64/zlib-ng-2.0.7-h0b41bf4_0.conda + hash: + md5: 49e8329110001f04923fe7e864990b0c + sha256: 6b3a22b7cc219e8d83f16c1ceba67aa51e0b7e3bcc4a647b97a0a510559b0477 + category: main + optional: false - name: zstd version: 1.5.6 manager: conda diff --git a/ml-notebook/environment.yml b/ml-notebook/environment.yml index 3298daa7..0e41aaf0 100644 --- a/ml-notebook/environment.yml +++ b/ml-notebook/environment.yml @@ -5,8 +5,9 @@ channels: - conda-forge - nodefaults dependencies: - - flax + - cuda-version>=12.0 + - flax>=0.8.0 - jax - jupyterlab-nvdashboard - keras-cv - - tensorflow>=2.14.0=*cuda118* + - tensorflow>=2.15.0=cuda120* diff --git a/ml-notebook/packages.txt b/ml-notebook/packages.txt index 54f04858..3b1a69b0 100644 --- a/ml-notebook/packages.txt +++ b/ml-notebook/packages.txt @@ -14,7 +14,7 @@ aiosignal==1.3.1 alembic==1.13.1 annotated-types==0.6.0 anyio==4.3.0 -aom==3.7.1 +aom==3.8.2 appdirs==1.4.4 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 @@ -30,25 +30,28 @@ async_generator==1.10 atk-1.0==2.38.0 attrs==23.2.0 av==12.0.0 -aws-c-auth==0.7.3 -aws-c-cal==0.6.1 -aws-c-common==0.9.0 +aws-c-auth==0.7.8 +aws-c-cal==0.6.9 +aws-c-common==0.9.10 aws-c-compression==0.2.17 -aws-c-event-stream==0.3.1 -aws-c-http==0.7.11 -aws-c-io==0.13.32 -aws-c-mqtt==0.9.3 -aws-c-s3==0.3.14 -aws-c-sdkutils==0.1.12 +aws-c-event-stream==0.3.2 +aws-c-http==0.7.14 +aws-c-io==0.13.36 +aws-c-mqtt==0.9.10 +aws-c-s3==0.4.4 +aws-c-sdkutils==0.1.13 aws-checksums==0.1.17 -aws-crt-cpp==0.21.0 -aws-sdk-cpp==1.10.57 -awscli==2.13.39 -awscrt==0.19.0 +aws-crt-cpp==0.25.0 +aws-sdk-cpp==1.11.210 +awscli==2.15.54 +awscrt==0.19.19 azure-core==1.30.1 +azure-core-cpp==1.10.3 azure-datalake-store==0.0.51 azure-identity==1.16.0 azure-storage-blob==12.20.0 +azure-storage-blobs-cpp==12.10.0 +azure-storage-common-cpp==12.5.0 babel==2.14.0 beautifulsoup4==4.12.3 binutils==2.40 @@ -65,11 +68,13 @@ botocore==1.34.106 bottleneck==1.3.8 bounded-pool-executor==0.0.3 branca==0.7.2 -brotli==1.0.9 -brotli-bin==1.0.9 -brotli-python==1.0.9 +brotli==1.1.0 +brotli-bin==1.1.0 +brotli-python==1.1.0 +brunsli==0.1 bzip2==1.0.8 c-ares==1.28.1 +c-blosc2==2.14.3 c-compiler==1.7.0 ca-certificates==2024.2.2 cached-property==1.5.2 @@ -89,8 +94,9 @@ cfgrib==0.9.11.0 cfitsio==4.3.1 cftime==1.6.3 cgen==2020.1 +charls==2.4.2 charset-normalizer==3.3.2 -chex==0.1.83 +chex==0.1.86 ciso==0.2.0 click==8.1.7 click-plugins==1.1.1 @@ -104,8 +110,14 @@ comm==0.2.2 configobj==5.0.8 contourpy==1.2.1 cryptography==40.0.2 -cuda-version==11.8 -cudatoolkit==11.8.0 +cuda-crt-tools==12.4.131 +cuda-cudart==12.4.127 +cuda-cudart_linux-64==12.4.127 +cuda-nvcc-tools==12.4.131 +cuda-nvrtc==12.4.127 +cuda-nvtx==12.4.127 +cuda-nvvm-tools==12.4.131 +cuda-version==12.4 cudnn==8.9.7.29 cycler==0.12.1 cython==3.0.10 @@ -153,9 +165,9 @@ fastjmd95==0.2.1 fastprogress==1.0.3 ffmpeg==6.1.1 findlibs==0.0.5 -fiona==1.9.5 +fiona==1.9.6 flatbuffers==23.5.26 -flax==0.6.1 +flax==0.8.3 flox==0.9.7 folium==0.16.0 font-ttf-dejavu-sans-mono==2.37 @@ -180,7 +192,7 @@ gcc_impl_linux-64==12.3.0 gcc_linux-64==12.3.0 gcm_filters==0.3.0 gcsfs==2024.5.0 -gdal==3.8.1 +gdal==3.8.4 gdk-pixbuf==2.42.10 geocube==0.5.2 geographiclib==2.0 @@ -204,7 +216,7 @@ gmp==6.3.0 gnutls==3.7.9 google-api-core==2.19.0 google-auth==2.29.0 -google-auth-oauthlib==1.0.0 +google-auth-oauthlib==1.2.0 google-cloud-core==2.4.1 google-cloud-storage==2.16.0 google-crc32c==1.1.2 @@ -214,7 +226,7 @@ googleapis-common-protos==1.63.0 graphite2==1.3.13 graphviz==9.0.0 greenlet==3.0.3 -grpcio==1.54.3 +grpcio==1.59.3 gsw==3.6.18 gtk2==2.24.33 gts==0.7.6 @@ -235,7 +247,7 @@ hvplot==0.10.0 hyperframe==6.0.1 icu==73.2 idna==3.7 -imagecodecs-lite==2019.12.3 +imagecodecs==2024.1.1 imageio==2.34.1 importlib-metadata==7.1.0 importlib_metadata==7.1.0 @@ -257,8 +269,8 @@ ipywidgets==8.1.2 isodate==0.6.1 isoduration==20.11.0 jasper==4.2.4 -jax==0.4.13 -jaxlib==0.4.12 +jax==0.4.27 +jaxlib==0.4.23 jedi==0.19.1 jinja2==3.1.4 jmespath==1.0.1 @@ -294,9 +306,10 @@ jupyterlab_code_formatter==2.2.1 jupyterlab_pygments==0.3.0 jupyterlab_server==2.27.1 jupyterlab_widgets==3.0.10 +jxrlib==1.1 kagglehub==0.2.5 kealib==1.5.3 -keras==2.14.0 +keras==2.15.0 keras-core==0.1.7 keras-cv==0.9.0 kerchunk==0.2.5 @@ -309,21 +322,33 @@ lazy_loader==0.4 lcms2==2.16 ld_impl_linux-64==2.40 lerc==4.0.0 -libabseil==20230125.3 +libabseil==20230802.1 libaec==1.1.3 libarchive==3.7.2 -libarrow==12.0.1 +libarrow==14.0.2 +libarrow-acero==14.0.2 +libarrow-dataset==14.0.2 +libarrow-flight==14.0.2 +libarrow-flight-sql==14.0.2 +libarrow-gandiva==14.0.2 +libarrow-substrait==14.0.2 libasprintf==0.22.5 libasprintf-devel==0.22.5 libass==0.17.1 +libavif16==1.0.4 libblas==3.9.0 libboost-headers==1.85.0 -libbrotlicommon==1.0.9 -libbrotlidec==1.0.9 -libbrotlienc==1.0.9 +libbrotlicommon==1.1.0 +libbrotlidec==1.1.0 +libbrotlienc==1.1.0 libcblas==3.9.0 libcrc32c==1.1.2 +libcublas==12.4.5.8 +libcufft==11.2.1.3 +libcurand==10.3.5.147 libcurl==8.7.1 +libcusolver==11.6.1.9 +libcusparse==12.3.1.170 libdeflate==1.19 libdrm==2.4.120 libedit==3.1.20191231 @@ -335,7 +360,7 @@ libgcc-devel_linux-64==12.3.0 libgcc-ng==13.2.0 libgcrypt==1.10.3 libgd==2.3.3 -libgdal==3.8.1 +libgdal==3.8.4 libgettextpo==0.22.5 libgettextpo-devel==0.22.5 libgfortran-ng==13.2.0 @@ -346,37 +371,42 @@ libglu==9.0.0 libgomp==13.2.0 libgoogle-cloud==2.12.0 libgpg-error==1.49 -libgrpc==1.54.3 +libgrpc==1.59.3 libhwloc==2.10.0 +libhwy==1.1.0 libiconv==1.17 libidn2==2.3.7 libjpeg-turbo==3.0.0 +libjxl==0.10.2 libkml==1.3.0 liblapack==3.9.0 libllvm14==14.0.6 +libllvm15==15.0.7 libnetcdf==4.9.2 libnghttp2==1.58.0 +libnl==3.9.0 libnsl==2.0.1 -libnuma==2.0.18 +libnvjitlink==12.4.127 libopenblas==0.3.27 -libopenvino==2023.2.0 -libopenvino-auto-batch-plugin==2023.2.0 -libopenvino-auto-plugin==2023.2.0 -libopenvino-hetero-plugin==2023.2.0 -libopenvino-intel-cpu-plugin==2023.2.0 -libopenvino-intel-gpu-plugin==2023.2.0 -libopenvino-ir-frontend==2023.2.0 -libopenvino-onnx-frontend==2023.2.0 -libopenvino-paddle-frontend==2023.2.0 -libopenvino-pytorch-frontend==2023.2.0 -libopenvino-tensorflow-frontend==2023.2.0 -libopenvino-tensorflow-lite-frontend==2023.2.0 +libopenvino==2024.0.0 +libopenvino-auto-batch-plugin==2024.0.0 +libopenvino-auto-plugin==2024.0.0 +libopenvino-hetero-plugin==2024.0.0 +libopenvino-intel-cpu-plugin==2024.0.0 +libopenvino-intel-gpu-plugin==2024.0.0 +libopenvino-ir-frontend==2024.0.0 +libopenvino-onnx-frontend==2024.0.0 +libopenvino-paddle-frontend==2024.0.0 +libopenvino-pytorch-frontend==2024.0.0 +libopenvino-tensorflow-frontend==2024.0.0 +libopenvino-tensorflow-lite-frontend==2024.0.0 libopus==1.3.1 +libparquet==14.0.2 libpciaccess==0.18 -libpnetcdf==1.12.3 libpng==1.6.43 libpq==16.3 -libprotobuf==3.21.12 +libprotobuf==4.24.4 +libre2-11==2023.09.01 librsvg==2.56.3 librttopo==1.1.0 libsanitizer==12.3.0 @@ -388,14 +418,14 @@ libsqlite==3.45.3 libssh2==1.11.0 libstdcxx-ng==13.2.0 libtasn1==4.19.0 -libthrift==0.18.1 +libthrift==0.19.0 libtiff==4.6.0 libunistring==0.9.10 libutf8proc==2.8.0 libuuid==2.38.1 libuv==1.48.0 libva==2.21.0 -libvpx==1.13.1 +libvpx==1.14.0 libwebp==1.4.0 libwebp-base==1.4.0 libxcb==1.15 @@ -405,6 +435,7 @@ libxml2==2.12.7 libxslt==1.1.39 libzip==1.10.1 libzlib==1.2.13 +libzopfli==1.0.3 line_profiler==4.1.1 linkify-it-py==2.0.3 llvmlite==0.41.1 @@ -430,8 +461,6 @@ minizip==4.0.5 mistune==3.0.2 ml_dtypes==0.2.0 morecantile==5.3.0 -mpi==1.0 -mpich==4.2.1 msal==1.28.0 msal_extensions==1.1.0 msgpack-python==1.0.8 @@ -469,15 +498,16 @@ numpy==1.26.4 numpy_groupies==0.11.1 oauthlib==3.2.2 ocl-icd==2.3.2 -ocl-icd-system==1.0.0 odc-geo==0.4.5 odc-stac==0.3.9 -openh264==2.4.0 +openh264==2.4.1 openjpeg==2.5.2 openssl==3.3.0 +opt-einsum==3.3.0 opt_einsum==3.3.0 optax==0.2.2 -orc==1.9.0 +orbax-checkpoint==0.4.4 +orc==1.9.2 orjson==3.10.3 overrides==7.7.0 p11-kit==0.24.1 @@ -489,7 +519,6 @@ panel==1.4.2 pangeo-dask==2024.05.20 pangeo-notebook==2024.05.20 pango==1.52.1 -parallelio==2.6.2 param==2.1.0 parcels==3.0.2 parso==0.8.4 @@ -509,7 +538,7 @@ platformdirs==4.2.2 pluggy==1.5.0 pooch==1.8.1 pop-tools==2023.6.0 -poppler==23.12.0 +poppler==24.02.0 poppler-data==0.4.12 portalocker==2.8.2 postgresql==16.3 @@ -521,17 +550,18 @@ prompt-toolkit==3.0.38 prompt_toolkit==3.0.38 properscoring==0.1 proto-plus==1.23.0 -protobuf==4.21.12 +protobuf==4.24.4 psutil==5.9.8 pthread-stubs==0.4 ptyprocess==0.7.0 pugixml==1.14 pure_eval==0.2.2 py-xgboost==2.0.3 -pyarrow==12.0.1 +pyarrow==14.0.2 pyarrow-hotfix==0.6 pyasn1==0.6.0 pyasn1-modules==0.4.0 +pybind11-abi==4 pycairo==1.26.0 pycamhd==0.7.0 pycparser==2.22 @@ -560,7 +590,7 @@ pytest==8.2.1 python==3.11.9 python-blosc==1.11.1 python-cmr==0.11.0 -python-dateutil==2.9.0 +python-dateutil==2.8.2 python-eccodes==1.7.0 python-fastjsonschema==2.19.1 python-flatbuffers==24.3.25 @@ -584,13 +614,14 @@ pywavelets==1.4.1 pyyaml==6.0.1 pyzmq==26.0.3 rasterio==1.3.9 -rdma-core==28.9 -re2==2023.03.02 +rav1e==0.6.6 +rdma-core==51.0 +re2==2023.09.01 readline==8.2 rechunker==0.5.2 referencing==0.35.1 regex==2024.5.15 -requests==2.31.0 +requests==2.32.1 requests-oauthlib==2.0.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 @@ -604,11 +635,11 @@ rtree==1.2.0 ruamel.yaml==0.17.21 ruamel.yaml.clib==0.2.7 ruff==0.4.4 -s2n==1.3.49 +s2n==1.4.0 s3fs==2024.5.0 s3transfer==0.10.1 satpy==0.48.0 -scikit-image==0.20.0 +scikit-image==0.22.0 scikit-learn==1.4.2 scipy==1.13.0 seaborn==0.13.2 @@ -633,23 +664,24 @@ stack_data==0.6.2 stackstac==0.5.0 starlette==0.37.2 statsmodels==0.14.2 -svt-av1==1.8.0 +svt-av1==2.0.0 sysroot_linux-64==2.12 tbb==2021.12.0 tblib==3.0.0 -tensorboard==2.14.1 +tensorboard==2.15.2 tensorboard-data-server==0.7.0 -tensorflow==2.14.0 -tensorflow-base==2.14.0 +tensorflow==2.15.0 +tensorflow-base==2.15.0 tensorflow-datasets==4.8.3 -tensorflow-estimator==2.14.0 +tensorflow-estimator==2.15.0 tensorflow-metadata==1.13.1 +tensorstore==0.1.51 termcolor==2.4.0 terminado==0.18.1 threadpoolctl==3.5.0 -tifffile==2020.6.3 -tiledb==2.18.2 -tiledb-py==0.24.0 +tifffile==2024.5.10 +tiledb==2.20.0 +tiledb-py==0.26.0 timezonefinder==6.4.1 tinycss2==1.3.0 tinynetrc==1.3.1 @@ -674,7 +706,7 @@ typing_utils==0.1.0 tzcode==2024a tzdata==2024a uc-micro-py==1.0.3 -ucx==1.14.1 +ucx==1.15.0 ujson==5.10.0 uri-template==1.3.0 uriparser==0.9.8 @@ -733,7 +765,9 @@ yaml==0.2.5 yarl==1.9.4 zarr==2.17.2 zeromq==4.3.5 +zfp==1.0.1 zict==3.0.0 zipp==3.17.0 zlib==1.2.13 +zlib-ng==2.0.7 zstd==1.5.6 diff --git a/ml-notebook/virtual-packages.yml b/ml-notebook/virtual-packages.yml new file mode 100644 index 00000000..ffb8b22f --- /dev/null +++ b/ml-notebook/virtual-packages.yml @@ -0,0 +1,4 @@ +subdirs: + linux-64: + packages: + __cuda: "12.0" diff --git a/pangeo-notebook/conda-linux-64.lock b/pangeo-notebook/conda-linux-64.lock index 5316de82..886ef500 100644 --- a/pangeo-notebook/conda-linux-64.lock +++ b/pangeo-notebook/conda-linux-64.lock @@ -86,7 +86,7 @@ https://conda.anaconda.org/conda-forge/linux-64/nettle-3.9.1-h7ab15ed_0.conda#2b https://conda.anaconda.org/conda-forge/linux-64/nspr-4.35-h27087fc_0.conda#da0ec11a6454ae19bff5b02ed881a2b1 https://conda.anaconda.org/conda-forge/linux-64/ocl-icd-2.3.2-hd590300_1.conda#c66f837ac65e4d1cdeb80e2a1d5fcc3d https://conda.anaconda.org/conda-forge/linux-64/openh264-2.4.1-h59595ed_0.conda#3dfcf61b8e78af08110f5229f79580af -https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda#c0f3abb4a16477208bbd43a39bd56f18 +https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda#ba01a2fef8a67913acc4ab8da101dd27 https://conda.anaconda.org/conda-forge/linux-64/pixman-0.43.2-h59595ed_0.conda#71004cbf7924e19c02746ccde9fd7123 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036 https://conda.anaconda.org/conda-forge/linux-64/pugixml-1.14-h59595ed_0.conda#2c97dd90633508b422c11bd3018206ab @@ -475,7 +475,7 @@ https://conda.anaconda.org/conda-forge/linux-64/pycairo-1.26.0-py311h8feb60e_0.c https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.18.2-py311h5ecf98a_0.conda#0935eb48085bd65556bb16488866bb47 https://conda.anaconda.org/conda-forge/linux-64/pyproj-3.6.1-py311hca0b8b9_5.conda#cac429fcb9126d5e6f02c8ba61c2a811 https://conda.anaconda.org/conda-forge/noarch/pystac-1.10.1-pyhd8ed1ab_0.conda#438b12f2fcfa37b72787abb68baca9f7 -https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda#a30144e4156cdbb236f99ebb49828f8b +https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda#20ce56db6c7aae9e6654b358ecbfc470 https://conda.anaconda.org/conda-forge/noarch/rich-13.7.1-pyhd8ed1ab_0.conda#ba445bf767ae6f0d959ff2b40c20912b https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-2.0.30-py311h331c9d8_0.conda#2454969ff3b8306a0b1c832f449dc50f https://conda.anaconda.org/conda-forge/noarch/stack_data-0.6.2-pyhd8ed1ab_0.conda#e7df0fdd404616638df5ece6e69ba7af @@ -547,7 +547,7 @@ https://conda.anaconda.org/conda-forge/noarch/snuggs-1.4.7-py_0.tar.bz2#cb83a3d6 https://conda.anaconda.org/conda-forge/noarch/typer-slim-standard-0.12.3-hd8ed1ab_0.conda#8e56b98837d17e6ace4dc455d905709a https://conda.anaconda.org/conda-forge/linux-64/astropy-6.1.0-py311h18e1886_1.conda#ff593bf97f36a6961c07277908ccc7ee https://conda.anaconda.org/conda-forge/linux-64/aws-sdk-cpp-1.11.210-h0853bfa_5.conda#b923ffd222c9bb4bbf93b0fd18beac02 -https://conda.anaconda.org/conda-forge/linux-64/awscli-2.15.53-py311h38be061_0.conda#c1650d8d4f6bd0eb2a1bdf66a29172e8 +https://conda.anaconda.org/conda-forge/linux-64/awscli-2.15.54-py311h38be061_0.conda#8dd2d732482d2fa769ce48832ff59fb3 https://conda.anaconda.org/conda-forge/noarch/azure-datalake-store-0.0.51-pyh9f0ad1d_0.tar.bz2#0a6d240a3a8198dce8508a5409b4737e https://conda.anaconda.org/conda-forge/noarch/azure-storage-blob-12.20.0-pyhd8ed1ab_0.conda#f3f18f904f4944dc997570ed69afcf8a https://conda.anaconda.org/conda-forge/noarch/bokeh-3.4.1-pyhd8ed1ab_0.conda#0f8e0831bbf38d83973438ce9af9af9a diff --git a/pangeo-notebook/conda-lock.yml b/pangeo-notebook/conda-lock.yml index cfd3a56e..bea84e0c 100644 --- a/pangeo-notebook/conda-lock.yml +++ b/pangeo-notebook/conda-lock.yml @@ -632,7 +632,7 @@ package: category: main optional: false - name: awscli - version: 2.15.53 + version: 2.15.54 manager: conda platform: linux-64 dependencies: @@ -650,10 +650,10 @@ package: ruamel.yaml: '>=0.15.0,<=0.17.21' ruamel.yaml.clib: '>=0.2.0,<=0.2.7' urllib3: '>=1.25.4,<1.27' - url: https://conda.anaconda.org/conda-forge/linux-64/awscli-2.15.53-py311h38be061_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/awscli-2.15.54-py311h38be061_0.conda hash: - md5: c1650d8d4f6bd0eb2a1bdf66a29172e8 - sha256: 67446a1036cbf72db89d21358e26886244163ee849c9526da0db6a47b77b8ada + md5: 8dd2d732482d2fa769ce48832ff59fb3 + sha256: 6e31367e81d8374018362bf25259f65eeff5bf7132b646482ec6fb8d9fa59285 category: main optional: false - name: awscrt @@ -7156,10 +7156,10 @@ package: dependencies: ca-certificates: '' libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-hd590300_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_1.conda hash: - md5: c0f3abb4a16477208bbd43a39bd56f18 - sha256: fdbf05e4db88c592366c90bb82e446edbe33c6e49e5130d51c580b2629c0b5d5 + md5: ba01a2fef8a67913acc4ab8da101dd27 + sha256: addce4c7b00d8b8be6e46a3ba783e1ce56d470aa6399ad91a7703bb844a6be9c category: main optional: false - name: orc @@ -8804,7 +8804,7 @@ package: category: main optional: false - name: requests - version: 2.31.0 + version: 2.32.1 manager: conda platform: linux-64 dependencies: @@ -8813,10 +8813,10 @@ package: idna: '>=2.5,<4' python: '>=3.7' urllib3: '>=1.21.1,<3' - url: https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda hash: - md5: a30144e4156cdbb236f99ebb49828f8b - sha256: 9f629d6fd3c8ac5f2a198639fe7af87c4db2ac9235279164bfe0fcb49d8c4bad + md5: 20ce56db6c7aae9e6654b358ecbfc470 + sha256: 6c64bb15baf632e99c39099cd7ba9201b258a6323b8b47c8a902d0932813ff65 category: main optional: false - name: requests-oauthlib diff --git a/pangeo-notebook/packages.txt b/pangeo-notebook/packages.txt index 4aafe246..b2ebd592 100644 --- a/pangeo-notebook/packages.txt +++ b/pangeo-notebook/packages.txt @@ -41,7 +41,7 @@ aws-c-sdkutils==0.1.13 aws-checksums==0.1.17 aws-crt-cpp==0.25.0 aws-sdk-cpp==1.11.210 -awscli==2.15.53 +awscli==2.15.54 awscrt==0.19.19 azure-core==1.30.1 azure-core-cpp==1.10.3 @@ -577,7 +577,7 @@ re2==2023.09.01 readline==8.2 rechunker==0.5.2 referencing==0.35.1 -requests==2.31.0 +requests==2.32.1 requests-oauthlib==2.0.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 diff --git a/pytorch-notebook/conda-linux-64.lock b/pytorch-notebook/conda-linux-64.lock index 5e6f964d..22f3c934 100644 --- a/pytorch-notebook/conda-linux-64.lock +++ b/pytorch-notebook/conda-linux-64.lock @@ -1,11 +1,11 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 86959d9716a4682a940febc4e91098adcadb7c04b4eeda41b5a26231bd58cf23 +# input_hash: 2433f6d4ab4be92377fbe1324026abe81a4ce18e1a6a8082445e02a1ab49b049 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/_py-xgboost-mutex-2.0-gpu_0.tar.bz2#7702188077361f43a4d61e64c694f850 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef -https://conda.anaconda.org/conda-forge/noarch/cuda-version-11.8-h70ddcb2_3.conda#670f0e1593b8c1d84f57ad5fe5256799 +https://conda.anaconda.org/conda-forge/noarch/cuda-version-12.4-h3060b56_3.conda#c9a3fe8b957176e1a8452c6f3431b0d8 https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45 https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2#34893075a5c9e55cdafac56607368fc6 https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2#4d59c254e01d9cde7957100457e2d5fb @@ -21,6 +21,7 @@ https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-mpich.tar.bz2#c1fcff3417 https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.12-hd8ed1ab_0.conda#d8d7293c5b37f39b2ac32940621c6592 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d786502c97404c94d7d58d258a445a65 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 +https://conda.anaconda.org/conda-forge/noarch/cuda-cudart_linux-64-12.4.127-h85509e4_2.conda#329163110a96514802e9e64d971edf43 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_7.conda#abf3fec87c2563697defa759dec3d639 https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.12-he073ed8_17.conda#595db67e32b276298ff3d94d07d47fbf @@ -35,7 +36,9 @@ https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.17-h4ab18f5_0.c https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f https://conda.anaconda.org/conda-forge/linux-64/charls-2.4.2-h59595ed_0.conda#4336bd67920dd504cd8c6761d6a99645 -https://conda.anaconda.org/conda-forge/linux-64/cudatoolkit-11.8.0-h4ba93d1_13.conda#eb43f5f1f16e2fad2eba22219c3e499b +https://conda.anaconda.org/conda-forge/linux-64/cuda-cudart-12.4.127-he02047a_2.conda#a748faa52331983fc3adcc3b116fe0e4 +https://conda.anaconda.org/conda-forge/linux-64/cuda-nvrtc-12.4.127-he02047a_2.conda#80baf6262f4a1a0dde42d85aaa393402 +https://conda.anaconda.org/conda-forge/linux-64/cuda-nvtx-12.4.127-he02047a_2.conda#656a004b6e44f50ce71c65cab0d429b4 https://conda.anaconda.org/conda-forge/linux-64/dav1d-1.2.1-hd590300_0.conda#418c6ca5929a611cbd69204907a83995 https://conda.anaconda.org/conda-forge/linux-64/fmt-10.2.1-h00ab1b0_0.conda#35ef8bc24bd34074ebae3c943d551728 https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8 @@ -56,6 +59,8 @@ https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-h661eb56_2.conda#dd197c968bf9760bba0031888d431ede https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.1.0-hd590300_1.conda#aec6c91c7371c26392a06708a73c70e5 https://conda.anaconda.org/conda-forge/linux-64/libcrc32c-1.1.2-h9c3ff4c_0.tar.bz2#c965a5aa0d5c1c37ffc62dff36e28400 +https://conda.anaconda.org/conda-forge/linux-64/libcufft-11.2.1.3-he02047a_2.conda#d2641a67c207946ef96f1328c4a8e8ed +https://conda.anaconda.org/conda-forge/linux-64/libcurand-10.3.5.147-he02047a_2.conda#9c4886d513fd477df88d411cd274c202 https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda#8e88f9389f1165d7c0936fe40d9a9a79 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d @@ -66,6 +71,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libhwy-1.1.0-h00ab1b0_0.conda#88 https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7 +https://conda.anaconda.org/conda-forge/linux-64/libnvjitlink-12.4.127-he02047a_2.conda#303845d6c48bf4185dc4138634650468 https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.18-hd590300_0.conda#48f4330bfcd959c3cfb704d424903c82 https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-12.3.0-hb8811af_7.conda#ee573415c47ce17f65101d0b3fba396d @@ -83,13 +89,13 @@ https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda# https://conda.anaconda.org/conda-forge/linux-64/libzopfli-1.0.3-h9c3ff4c_0.tar.bz2#c66fe2d123249af7651ebde8984c51c2 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 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@@ -9441,7 +9601,7 @@ package: category: main optional: false - name: requests - version: 2.31.0 + version: 2.32.1 manager: conda platform: linux-64 dependencies: @@ -9450,10 +9610,10 @@ package: idna: '>=2.5,<4' python: '>=3.7' urllib3: '>=1.21.1,<3' - url: https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/requests-2.32.1-pyhd8ed1ab_0.conda hash: - md5: a30144e4156cdbb236f99ebb49828f8b - sha256: 9f629d6fd3c8ac5f2a198639fe7af87c4db2ac9235279164bfe0fcb49d8c4bad + md5: 20ce56db6c7aae9e6654b358ecbfc470 + sha256: 6c64bb15baf632e99c39099cd7ba9201b258a6323b8b47c8a902d0932813ff65 category: main optional: false - name: requests-oauthlib @@ -10258,7 +10418,7 @@ package: platform: linux-64 dependencies: aws-crt-cpp: '>=0.26.8,<0.26.9.0a0' - aws-sdk-cpp: '>=1.11.267,<1.11.268.0a0' + aws-sdk-cpp: '>=1.11.329,<1.11.330.0a0' azure-core-cpp: '>=1.11.1,<1.11.2.0a0' azure-identity-cpp: '>=1.6.0,<1.6.1.0a0' azure-storage-blobs-cpp: '>=12.10.0,<12.10.1.0a0' @@ -10268,8 +10428,8 @@ package: libabseil: '>=20240116.2,<20240117.0a0' libcurl: '>=8.7.1,<9.0a0' libgcc-ng: '>=12' - libgoogle-cloud: '>=2.23.0,<2.24.0a0' - libgoogle-cloud-storage: '>=2.23.0,<2.24.0a0' + libgoogle-cloud: '>=2.24.0,<2.25.0a0' + libgoogle-cloud-storage: '>=2.24.0,<2.25.0a0' libstdcxx-ng: '>=12' libwebp-base: '>=1.4.0,<2.0a0' libzlib: '>=1.2.13,<1.3.0a0' @@ -10277,10 +10437,10 @@ package: openssl: '>=3.3.0,<4.0a0' spdlog: '>=1.13.0,<1.14.0a0' zstd: '>=1.5.6,<1.6.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.23.0-h27f064a_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.23.0-h8c8a0e1_1.conda hash: - md5: 8a4a8fd1af3cfbdcb54ea7282965d91a - sha256: 6685f95a9a9f801cda5cc0848d5afa1fca4395a8cb4fb47ae6c3222c76d6cbfb + md5: 6284ea476918456659bec1250fa4a936 + sha256: c79cc1d2af6e072c6c394bd03bb314c4da775833f3b26880b77592a77863cbc8 category: main optional: false - name: tiledb-py @@ -10465,8 +10625,11 @@ package: platform: linux-64 dependencies: __glibc: '>=2.17,<3.0.a0' - cudatoolkit: '>=11.8,<12' + cuda-version: '>=12.0,<13' cudnn: '>=8.9.7.29,<9.0a0' + libcublas: '>=12.4.5.8,<13.0a0' + libcusolver: '>=11.6.1.9,<12.0a0' + libcusparse: '>=12.3.1.170,<13.0a0' libgcc-ng: '>=12' libjpeg-turbo: '>=3.0.0,<4.0a0' libpng: '>=1.6.43,<1.7.0a0' @@ -10478,10 +10641,10 @@ package: python_abi: 3.11.* pytorch: '>=2.3.0,<2.4.0a0' requests: '' - url: https://conda.anaconda.org/conda-forge/linux-64/torchvision-0.18.0-cuda118py311hf53cd17_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/torchvision-0.18.0-cuda120py311hdb12af6_0.conda hash: - md5: 866f2c25aa9a6dcd913dcdb6ffde6e1e - sha256: a3d6360707712169f007b796db3d5194938cf6cfb92fa81e3efda24c31b81b26 + md5: 8d8bd84244b2132e4dab1db96a06089b + sha256: 4853ff7b60df9adbfb763da5362359e69ee6bded1788ea1731ff8a6d40cdb175 category: main optional: false - name: tornado diff --git a/pytorch-notebook/environment.yml b/pytorch-notebook/environment.yml index 25125618..6c7fb7fb 100644 --- a/pytorch-notebook/environment.yml +++ b/pytorch-notebook/environment.yml @@ -5,8 +5,9 @@ channels: - conda-forge - nodefaults dependencies: + - cuda-version>=12.0 - jupyterlab-nvdashboard - gpytorch - - pytorch>=2.0.0=*cuda118* - - torchvision>=0.15.1=*cuda118* + - pytorch>=2.1.0=cuda120* + - torchvision>=0.16.1=cuda120* - torchgeo diff --git a/pytorch-notebook/packages.txt b/pytorch-notebook/packages.txt index 9f214894..1038292c 100644 --- a/pytorch-notebook/packages.txt +++ b/pytorch-notebook/packages.txt @@ -42,7 +42,7 @@ aws-c-s3==0.5.8 aws-c-sdkutils==0.1.16 aws-checksums==0.1.18 aws-crt-cpp==0.26.8 -aws-sdk-cpp==1.11.267 +aws-sdk-cpp==1.11.329 awscli==1.32.106 azure-core==1.30.1 azure-core-cpp==1.11.1 @@ -109,8 +109,11 @@ comm==0.2.2 configobj==5.0.8 contourpy==1.2.1 cryptography==42.0.7 -cuda-version==11.8 -cudatoolkit==11.8.0 +cuda-cudart==12.4.127 +cuda-cudart_linux-64==12.4.127 +cuda-nvrtc==12.4.127 +cuda-nvtx==12.4.127 +cuda-version==12.4 cudnn==8.9.7.29 cycler==0.12.1 cython==3.0.10 @@ -334,7 +337,12 @@ libbrotlidec==1.1.0 libbrotlienc==1.1.0 libcblas==3.9.0 libcrc32c==1.1.2 +libcublas==12.4.5.8 +libcufft==11.2.1.3 +libcurand==10.3.5.147 libcurl==8.7.1 +libcusolver==11.6.1.9 +libcusparse==12.3.1.170 libdeflate==1.20 libdrm==2.4.120 libedit==3.1.20191231 @@ -355,8 +363,8 @@ libgirepository==1.80.1 libglib==2.80.2 libglu==9.0.0 libgomp==13.2.0 -libgoogle-cloud==2.23.0 -libgoogle-cloud-storage==2.23.0 +libgoogle-cloud==2.24.0 +libgoogle-cloud-storage==2.24.0 libgpg-error==1.49 libgrpc==1.62.2 libhwloc==2.10.0 @@ -373,6 +381,7 @@ libmagma_sparse==2.7.2 libnetcdf==4.9.2 libnghttp2==1.58.0 libnsl==2.0.1 +libnvjitlink==12.4.127 libopenblas==0.3.27 libopenvino==2024.1.0 libopenvino-auto-batch-plugin==2024.1.0 @@ -616,7 +625,7 @@ re2==2023.09.01 readline==8.2 rechunker==0.5.2 referencing==0.35.1 -requests==2.31.0 +requests==2.32.1 requests-oauthlib==2.0.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 diff --git a/pytorch-notebook/virtual-packages.yml b/pytorch-notebook/virtual-packages.yml new file mode 100644 index 00000000..ffb8b22f --- /dev/null +++ b/pytorch-notebook/virtual-packages.yml @@ -0,0 +1,4 @@ +subdirs: + linux-64: + packages: + __cuda: "12.0"