Code for presentation at bioinformatics club, ecobiotec, CIIMAR, UP.
Examples of what to do and what no to do in taxonomic data visualization, using a Spongia officinalis dataset from CCMAR.
Raw data available in MGnify (MGYS00000563).
Slides available in https://docs.google.com/presentation/d/1zYVtu2jo_IYh6ApPZcV7hvd9si_ue99W2qd9cz6McYo/edit#slide=id.p
Files:
-> spongeDataProcessing.R imports data from MGnify and cleans the OTU tables into a tidy format;
-> plotsSponge.R makes the plots available in the presentation and a few more.
-> metadata is just a table with information of the sample IDs