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28 followers · 14 following
  • University of Wisconsin - Madison
  • Madison, WI, USA
  • LinkedIn in/patriciatran

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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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@McMahonLab @AnantharamanLab @AquaticDataSciOpenSci @UW-Madison-Bacteriology-Bioinformatics

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patriciatran/README.md

Hi, I'm Patricia! 👋

I am a Research Computing Professional working as a Bioinformatics and Computational Pipeline Scientist at the University of Wisconsin-Madison.

I obtained my PhD specializing in genomics, bioinformatics, and microbial ecology.

I am passionate about making computing more accessible and approachable for all learners.

🌐 Socials:

LinkedIn GoogleScholar ORCID ResarchGate

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  1. UW-Madison-Bacteriology-Bioinformatics/binning_wf UW-Madison-Bacteriology-Bioinformatics/binning_wf Public

    Pipeline to bin metagenomes into high-quality metagenomic-assembled genomes using DAGman and HTCondor.

    Shell 1

  2. UW-Madison-Bacteriology-Bioinformatics/Computing UW-Madison-Bacteriology-Bioinformatics/Computing Public

    A guide to getting started with computing for microbiology analyses at UW-Madison

    1

  3. UW-Madison-Bacteriology-Bioinformatics/chtc-containers UW-Madison-Bacteriology-Bioinformatics/chtc-containers Public

    This repos contains information how to build, test, and run containers on CHTC. It contains examples of definition files for several bioinformatics softwares.

  4. variant-annotation variant-annotation Public

    Pipeline to annotate genomic variants in long-read data.

    Shell 1