Merge pull request #4 from patrikkaura/3-refactor-migrate-to-github

refactor: migrate to github

.github/workflows/github-action-release.yml

@@ -0,0 +1,31 @@
+name: dna-analyser-ibp-release
+
+on:
+  push:
+    tags:
+      - 'v[0-9]+.[0-9]+.[0-9]+'
+
+jobs:
+  publish:
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.6"]
+        poetry-version: ["1.1.11"]
+        os: [ubuntu-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: start image
+        uses: abatilo/actions-poetry@v2.0.0
+      - name: poetry install
+        run: poetry install
+      - name: poetry publish
+        env:
+          PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }}
+        run: |
+          poetry config pypi-token.pypi $PYPI_TOKEN
+          poetry publish --build

.github/workflows/github-action-tests.yml

@@ -0,0 +1,36 @@
+name: dna-analyser-ibp-test
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+  schedule:
+    cron: "0 12 * * *"
+
+jobs:
+  tests:
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.6"]
+        poetry-version: ["1.1.11"]
+        os: [ubuntu-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: start image
+        uses: abatilo/actions-poetry@v2.0.0
+      - name: poetry install
+        run: poetry install
+      - name: test-models
+        run: poetry run pytest tests/test_models
+      - name: test-adapters
+        run: poetry run pytest tests/test_adapters
+      - name: test-utils
+        run: poetry run pytest tests/test_utils

README.md

@@ -2,7 +2,7 @@
 <br />
 <div align="center">
     <a href="https://pypi.org/project/dna-analyser-ibp/">
-    <img src="https://img.shields.io/badge/Version 3.4.1-green?style=for-the-badge" alt='package_version'/>
+    <img src="https://img.shields.io/badge/Version 3.5.0-green?style=for-the-badge" alt='package_version'/>
     </a>
     <img src="https://img.shields.io/badge/Python 3.6+-00599C?style=for-the-badge&logo=python&logoColor=white" alt='python_version'/>
     <img src="https://img.shields.io/badge/jupyter-gray?style=for-the-badge&logo=jupyter" alt='jupyter'/>
@@ -164,7 +164,6 @@ API.p53.run_multiple(
 ## DEV dependencies
 
 * pytest = "^6.0.2"
-* pdoc3 = "^0.9.1"
 * black = "^20.0"
 
 ## Tests

pyproject.toml

@@ -1,13 +1,13 @@
 [tool.poetry]
 name = "DNA_analyser_IBP"
-version = "3.4.1"
+version = "3.5.0"
 description = "DNA analyser API wrapper tool for Jupiter notebooks."
 authors = ["Patrik Kaura <patrikkaura@gmail.com>"]
 license = "GPL-3.0-or-later"
 readme = "README.md"
 homepage = "http://bioinformatics.ibp.cz/"
-repository = "https://gitlab.com/PatrikKaura/DNA_analyser_IBP/"
-documentation = "https://patrikkaura.gitlab.io/DNA_analyser_IBP/"
+repository = "https://github.com/patrikkaura/dna-analyser-ibp"
+documentation = "https://github.com/patrikkaura/dna-analyser-ibp/"
 keywords = ["DNA", "g4hunter", "g4killer", "p53"]
 classifiers=[
         "Intended Audience :: Education",
@@ -26,19 +26,18 @@ packages = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.6.9"
-requests = "^2.20.0"
-pandas = "^1.0.0"
-tqdm = "^4.28"
-pyjwt = "^1.7.1"
-matplotlib = "^3.0.3"
-requests-toolbelt = "^0.9.1"
-tenacity = "^6.1.0"
+python = "3.6.15"
+requests = "2.20.0"
+pandas = "1.0.0"
+tqdm = "4.28"
+pyjwt = "1.7.1"
+matplotlib = "3.0.3"
+requests-toolbelt = "0.9.1"
+tenacity = "6.1.0"
 
 
 [tool.poetry.dev-dependencies]
-pytest = "^6.0.2"
-pdoc3 = "^0.9.1"
+pytest = "6.0.2"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]