2.2

Fixes

• Trimming step works properly for new output organization

New Features

• file trim.summary is now a summary of the number of markers removed per LG
• file trim.details is the original trim.summary, where it lists all the markers removed from that LG

2.1

Changes

• scripts provided by Lep-Map3 have been moved to the LM3/scripts folder
• R code now follows consistent camel-case

2.0

Breaking changes

• Folder outputs have different and sequential names
• Some modules have their own folders now (like trimming)
• map_summary.sh now summarizes a single map

New Features

• config.yaml has a new parameter
• new optional scripts for:
  • map refinement
  • iterating JoinSingles2All
  • setting a hard LG maximum and reassigning all those exceeding it to group 0

Fixes

• The original map_summary.sh didn't always accurately summarize the data and has been replaced with map_summary.r

1.1

Adds more scripts to scripts/ that let you:

1. refine a generated map
2. generate Lep-Anchor input intervals
3. extract marker information from the data file

1.0

The first formal release using the github release system.

• data tolerance and filtering circumvention added
• map refining script(s) added
• conda environment yaml added
• wiki and readme updated to reflect changes
• map summary script updated to output fixed-width table for better legibility