Merge pull request #443 from pepkit/dev_portable_flag

add portable flag to looper report
pepkit · Jan 22, 2024 · 1c9d5ea · 1c9d5ea
2 parents 00fb990 + ae1cefa
commit 1c9d5ea
Show file tree

Hide file tree

Showing 2 changed files with 14 additions and 2 deletions.
diff --git a/looper/cli_looper.py b/looper/cli_looper.py
@@ -501,6 +501,12 @@ def add_subparser(cmd):
             version="{}".format(" ".join(subparsers.choices.keys())),
         )
 
+        report_subparser.add_argument(
+            "--portable",
+            help="Makes html report portable.",
+            action="store_true",
+        )
+
         result.append(parser)
     return result
 

diff --git a/looper/looper.py b/looper/looper.py
@@ -547,12 +547,16 @@ def __call__(self, args):
         p = self.prj
         project_level = args.project
 
+        portable = args.portable
+
         if project_level:
             psms = self.prj.get_pipestat_managers(project_level=True)
             print(psms)
             for name, psm in psms.items():
                 # Summarize will generate the static HTML Report Function
-                report_directory = psm.summarize(looper_samples=self.prj.samples)
+                report_directory = psm.summarize(
+                    looper_samples=self.prj.samples, portable=portable
+                )
                 print(f"Report directory: {report_directory}")
         else:
             for piface_source_samples in self.prj._samples_by_piface(
@@ -567,7 +571,9 @@ def __call__(self, args):
                 print(psms)
                 for name, psm in psms.items():
                     # Summarize will generate the static HTML Report Function
-                    report_directory = psm.summarize(looper_samples=self.prj.samples)
+                    report_directory = psm.summarize(
+                        looper_samples=self.prj.samples, portable=portable
+                    )
                     print(f"Report directory: {report_directory}")