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Looper 2.0.0 Release #509

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Looper 2.0.0 Release #509

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@donaldcampbelljr donaldcampbelljr commented Jul 1, 2024 •
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donaldcampbelljr and others added 30 commits June 25, 2024 12:58
@donaldcampbelljr
remove checking for config file
256d585
@donaldcampbelljr
Merge branch 'refs/heads/dev' into dev_rename_args_455
848f0ee 
# Conflicts:
#	looper/cli_pydantic.py
@donaldcampbelljr
re-commit no longer checking for subcommand_args.config_file
7a35c49
@donaldcampbelljr
refactor --looper-config to --config
9c3d9e3
@donaldcampbelljr
remove --config-file in favor of using --pep-config
d8437aa
@donaldcampbelljr
work towards using consolidated piface, update generic schema
a62ff35
@donaldcampbelljr
pull updated hell_looper dev for #493
168f012
@donaldcampbelljr
fix pipeline_type for pipestat usage with consolidated pipelines, fix…
2d2475b 
… remaning tests
@donaldcampbelljr
refactor looper init tutorial and add some color to terminal using rich
eaab8f9
@donaldcampbelljr
lint
db29fd9
@donaldcampbelljr
add changes to init_piface, change colors for better contrast
acc02ab
@donaldcampbelljr @khoroshevskyi
Update looper/cli_pydantic.py
0ffb634 
Co-authored-by: Oleksandr <sasha99250@gmail.com>
@donaldcampbelljr @khoroshevskyi
Update looper/cli_pydantic.py
f63597c 
Co-authored-by: Oleksandr <sasha99250@gmail.com>
@donaldcampbelljr
simplify selection options
a24e0e8
@donaldcampbelljr
add docstrings
9d4551e
@donaldcampbelljr
fix looper config formatting on write
cc1b1ad
@donaldcampbelljr
Merge pull request #508 from pepkit/dev_looper_init_walkthrough
636d10c 
Polish looper init tutorial and looper init_piface
@donaldcampbelljr
add PipelineInterfaceConfigError
0a90e9a
@donaldcampbelljr
Merge pull request #507 from pepkit/dev_consolidate_pifaces
923495d 
Consolidate pifaces
@donaldcampbelljr
Merge pull request #505 from pepkit/dev_rename_args_455
5ca885c 
Dev rename args 455
@donaldcampbelljr
update version and changelog
09c0665
@donaldcampbelljr
add ability to init generic piface during config if it does not exist
c344f92
@donaldcampbelljr
add accepting multiple pifaces
487e833
@donaldcampbelljr
allow generating generic pifaces for many pifaces
e5a8e7f
@donaldcampbelljr
update req peppy>=0.40.4
f64a4f0
@donaldcampbelljr
fix #512
a264e80
@donaldcampbelljr
fix #511
4c9549b
@donaldcampbelljr
add flag to looper init #514
40c6634
@donaldcampbelljr
remove pause, fix registry path warning #514
f3aa7bf
@donaldcampbelljr
remove restarting looper_init, simply show output #514
f5cd906
donaldcampbelljr and others added 26 commits August 22, 2024 08:59
@donaldcampbelljr
fix extra dash when writing .looper.yaml #514
70dfb23
@donaldcampbelljr
add shortform argument for --package
54682ae
@donaldcampbelljr
make compute_packages a property and fix divvy inspect
fdac0a8
@donaldcampbelljr
remove position based argument for divvy config, must use --config or…
7d457a1 
… run as default config
@donaldcampbelljr
fix compute key value parsing under cli key in looper config
7966ec6
@donaldcampbelljr
allow compute section under cli key to be a single string for conveni…
907037e 
…ence
@donaldcampbelljr
add exception messaging for phc login #516
08af6cc
@donaldcampbelljr
Fix #518
a01722f
@donaldcampbelljr
Add better warnings for missing looper config files #515
d9ea2ad
@donaldcampbelljr
Add missing and malformed piface warning #515
b29494c
@donaldcampbelljr
add clarity if config file cannot be parsed #515
db8c228
@donaldcampbelljr
allow calling pephub_path directly from pipestat namespace, version b…
3a9874e 
…ump pipestat to 0.10.2, Fixes #519
@donaldcampbelljr
fix for #511
ffa812b
@donaldcampbelljr
Revert "fix #511"
68a1729 
This reverts commit 4c9549b.
@donaldcampbelljr
Revert "add exception messaging for phc login #516"
d5fd36a 
This reverts commit 08af6cc.
@donaldcampbelljr
replace deprecated func
d0cffcb
@donaldcampbelljr
Fix divvy, remove requirement for old package, ensure looper is using…
165b183 
… internal module #520
@donaldcampbelljr
update peppy and eido requirements
f23f5aa
@donaldcampbelljr
update the looper init_piface output to no longer use var_templates
a7246de
@donaldcampbelljr
update changelog and version for 2.0.0a2 prerelease
c32c924
@donaldcampbelljr
refactor tests for new hello_looper changes
6a66d31
@donaldcampbelljr
pull updated hello_looper readme
8796646
@donaldcampbelljr
Merge pull request #525 from pepkit/dev_refactor_tests_hello_looper
8e48df9 
refactor tests for new hello_looper changes
@donaldcampbelljr
pull updated hello_looper output schema
b54e678
@donaldcampbelljr
pull updated hello_looper output schema (again)
89cbfc2
@nsheff
use filepath (requires new yacman)
e0aaa04
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@donaldcampbelljr @nsheff