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Merge pull request #302 from pepkit/dev #39

Merge pull request #302 from pepkit/dev

Merge pull request #302 from pepkit/dev #39

Workflow file for this run

# This workflow will build and push a new container image to Amazon ECR,
# and then will deploy a new task definition to Amazon ECS, when a release is created
#
# To use this workflow, you will need to complete the following set-up steps:
#
# 1. Create an ECR repository to store your images.
# For example: `aws ecr create-repository --repository-name my-ecr-repo --region us-east-2`.
# Replace the value of `ECR_REPOSITORY` in the workflow below with your repository's name.
# Replace the value of `aws-region` in the workflow below with your repository's region.
#
# 2. Create an ECS task definition, an ECS cluster, and an ECS service.
# For example, follow the Getting Started guide on the ECS console:
# https://us-east-2.console.aws.amazon.com/ecs/home?region=us-east-2#/firstRun
# Replace the values for `service` and `cluster` in the workflow below with your service and cluster names.
#
# 3. Store your ECS task definition as a JSON file in your repository.
# The format should follow the output of `aws ecs register-task-definition --generate-cli-skeleton`.
# Replace the value of `task-definition` in the workflow below with your JSON file's name.
# Replace the value of `container-name` in the workflow below with the name of the container
# in the `containerDefinitions` section of the task definition.
#
# 4. Store an IAM user access key in GitHub Actions secrets named `AWS_ACCESS_KEY_ID` and `AWS_SECRET_ACCESS_KEY`.
# See the documentation for each action used below for the recommended IAM policies for this IAM user,
# and best practices on handling the access key credentials.
on:
push:
branches:
- master
workflow_dispatch:
inputs: null
name: Deploy API to AWS - primary
jobs:
deploy:
env:
server: primary
name: Deploy
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v4
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: us-east-1
- name: Login to Amazon ECR
id: login-ecr
uses: aws-actions/amazon-ecr-login@v1
- name: Build, tag, and push image to Amazon ECR
id: build-image
env:
REGISTRY: ${{ steps.login-ecr.outputs.registry }}
REPOSITORY: pephub
IMAGE_TAG: ${{ github.sha }}
run: |
docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG -f deployment/pephub.databio.org/Dockerfile .
docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG
echo "image=$REGISTRY/$REPOSITORY:$IMAGE_TAG" >> $GITHUB_OUTPUT
- name: Fill in the new image ID in the Amazon ECS task definition
id: task-def
uses: aws-actions/amazon-ecs-render-task-definition@v1
with:
task-definition: deployment/task_defs/primary.json
container-name: pephub-container
image: ${{ steps.build-image.outputs.image }}
- name: Deploy Amazon ECS task definition
uses: aws-actions/amazon-ecs-deploy-task-definition@v1
with:
task-definition: ${{ steps.task-def.outputs.task-definition }}
service: pephub-service-primary
cluster: yeti
wait-for-service-stability: true