Merge schemas with pephub

environment/local.dev.env

@@ -15,4 +15,6 @@ export HF_MODEL="BAAI/bge-small-en-v1.5"
 
 export GH_CLIENT_ID=`pass databio/pephub/gh_client_id`
 export GH_CLIENT_SECRET=`pass databio/pephub/gh_client_secret`
-export BASE_URI=http://localhost:8000
+export BASE_URI=http://localhost:8000
+
+export PH_DEV_MODE=true

pephub/dependencies.py

@@ -13,7 +13,7 @@
 from fastapi import Depends, Header, Query
 from fastapi.exceptions import HTTPException
 from fastapi.security import HTTPBearer
-from fastembed.embedding import FlagEmbedding as Embedding
+from fastembed.embedding import TextEmbedding as Embedding
 from pepdbagent import PEPDatabaseAgent
 from pepdbagent.const import DEFAULT_TAG
 from pepdbagent.exceptions import ProjectNotFoundError

pephub/main.py

@@ -15,6 +15,8 @@
 from .routers.api.v1.project import project as api_project
 from .routers.api.v1.project import projects as api_projects
 from .routers.api.v1.search import search as api_search
+from .routers.api.v1.schemas import schemas as api_schemas
+from .routers.api.v1.schemas import groups as api_groups
 from .routers.auth.base import auth as auth_router
 from .routers.eido.eido import router as eido_router
 
@@ -82,6 +84,8 @@
 app.include_router(api_project)
 app.include_router(api_projects)
 app.include_router(api_search)
+app.include_router(api_schemas)
+app.include_router(api_groups)
 app.include_router(auth_router)
 app.include_router(eido_router)