-
Notifications
You must be signed in to change notification settings - Fork 1
/
NAMESPACE
103 lines (102 loc) · 3.07 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
# Generated by roxygen2: do not edit by hand
S3method(makepredictcall,well_knotted_spline)
export("weitrix_weights<-")
export("weitrix_x<-")
export(as_weitrix)
export(bless_weitrix)
export(components_seq_scree)
export(components_seq_screeplot)
export(counts_proportions)
export(counts_shift)
export(matrix_long)
export(weitrix_calibrate)
export(weitrix_calibrate_all)
export(weitrix_calibrate_trend)
export(weitrix_calplot)
export(weitrix_components)
export(weitrix_components_seq)
export(weitrix_confects)
export(weitrix_dispersions)
export(weitrix_elist)
export(weitrix_hill)
export(weitrix_randomize)
export(weitrix_sd_confects)
export(weitrix_weights)
export(weitrix_x)
export(well_knotted_spline)
import(methods)
import(stats)
import(utils)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,rbind)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpisup)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpnworkers)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(Ckmeans.1d.dp,Ckmeans.1d.dp)
importFrom(DelayedArray,apply)
importFrom(DelayedArray,getAutoBPPARAM)
importFrom(DelayedArray,getAutoBlockSize)
importFrom(DelayedArray,realize)
importFrom(DelayedArray,setAutoBPPARAM)
importFrom(DelayedArray,sweep)
importFrom(DelayedMatrixStats,colSums2)
importFrom(DelayedMatrixStats,rowSums2)
importFrom(RhpcBLASctl,blas_get_num_procs)
importFrom(RhpcBLASctl,blas_set_num_threads)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(assertthat,assert_that)
importFrom(assertthat,is.number)
importFrom(assertthat,is.string)
importFrom(dplyr,left_join)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_trans)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bin2d)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,theme)
importFrom(ggplot2,vars)
importFrom(glm2,glm2)
importFrom(grDevices,dev.cur)
importFrom(limma,getEAWP)
importFrom(limma,squeezeVar)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(rlang,as_label)
importFrom(rlang,enquo)
importFrom(rlang,eval_tidy)
importFrom(rlang,quo)
importFrom(rlang,quo_get_expr)
importFrom(scales,percent)
importFrom(splines,ns)
importFrom(topconfects,nest_confects)
importFrom(topconfects,normal_confects)