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Version 1.0.0
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@lemieuxl lemieuxl released this 01 May 14:03
· 337 commits to master since this release
1.0.0
6bd2a46

This is the initial release of gwip (Genome-Wide Imputation Pipeline). Interesting features include:

  • Complete and automatic genome-wide imputation pipeline from binary Plink files. Steps include:
    • strand verification
    • phasing
    • imputation
    • quality metrics
  • All analysis are performed by chromosome and can be launch on an computer cluster using the DRMAA API (if required).
  • Automatically generates a LaTeX report that can be compiled in PDF format.
  • Commonly used statistical analysis
    • linear regression
    • logistic regression
    • SKAT analysis
    • survival analysis (Cox’s proportional hazard model)
  • Indexing of file for easy imputed marker extraction

Complete documentation is available at http://pgxcentre.github.io/gwip

Installation: http://pgxcentre.github.io/gwip/installation.html

Tutorials: http://pgxcentre.github.io/gwip/tutorial.html

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