Skip to content

Version 1.2.0
Compare
Choose a tag to compare
@lemieuxl lemieuxl released this 16 Jun 17:49
· 263 commits to master since this release
1.2.0
cb14915

This new release of our genome-wide imputation pipeline includes the following changes:

  • The impute2-merger tool now merges the marker-wise information file produced for each segment (*.impute2_info) into a single file (in the final_impute2 directory of each chromosome).
  • The impute2-extractor tool can now extract markers according to their information value (along with other metrics, such as genomic locations, minor allele frequency and call rate).
  • Minor bug fixed in the impute2-extractor tool, where minor allele frequency was computed using all probabilities instead of filtering out values lower than the specified threshold.

In brief, this release now takes into account the information file provided by IMPUTE2. This information file includes the measure of the observed statistical information associated with the allele frequency estimate. More information about this metric is available here.

Assets 3
Loading