Fix nfcore lint issues

phac-nml · Nov 7, 2024 · 46bb5fa · 46bb5fa
1 parent 5185a75
commit 46bb5fa
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Showing 4 changed files with 5 additions and 86 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -34,5 +34,8 @@ lint:
     - custom_config
     - manifest.name
     - manifest.homePage
+    - params.max_cpus
+    - params.max_memory
+    - params.max_time
   readme:
     - nextflow_badge
diff --git a/assets/schema_input.json b/assets/schema_input.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "https://json-schema.org/draft-07/schema",
     "$id": "https://raw.githubusercontent.com/phac-nml/fetchdatairidanext/main/assets/schema_input.json",
     "title": "phac-nml/fetchdatairidanext pipeline - params.input schema",
     "description": "Schema for the file provided with params.input",

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "https://json-schema.org/draft-07/schema",
     "$id": "https://raw.githubusercontent.com/phac-nml/fetchdatairidanext/main/nextflow_schema.json",
     "title": "phac-nml/fetchdatairidanext pipeline parameters",
     "description": "IRIDA Next NCBI Download pipeline",

diff --git a/tests/pipelines/fetchdatairidanext.nf.test b/tests/pipelines/fetchdatairidanext.nf.test