diff --git a/.nf-core.yml b/.nf-core.yml
index 1f79c1a..3d97354 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -34,5 +34,8 @@ lint:
     - custom_config
     - manifest.name
     - manifest.homePage
+    - params.max_cpus
+    - params.max_memory
+    - params.max_time
   readme:
     - nextflow_badge
diff --git a/assets/schema_input.json b/assets/schema_input.json
index dc3b468..f1060cf 100644
--- a/assets/schema_input.json
+++ b/assets/schema_input.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "https://json-schema.org/draft-07/schema",
     "$id": "https://raw.githubusercontent.com/phac-nml/fetchdatairidanext/main/assets/schema_input.json",
     "title": "phac-nml/fetchdatairidanext pipeline - params.input schema",
     "description": "Schema for the file provided with params.input",
diff --git a/nextflow_schema.json b/nextflow_schema.json
index e7709da..a5f1c26 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "https://json-schema.org/draft-07/schema",
     "$id": "https://raw.githubusercontent.com/phac-nml/fetchdatairidanext/main/nextflow_schema.json",
     "title": "phac-nml/fetchdatairidanext pipeline parameters",
     "description": "IRIDA Next NCBI Download pipeline",
diff --git a/tests/pipelines/fetchdatairidanext.nf.test b/tests/pipelines/fetchdatairidanext.nf.test
deleted file mode 100644
index b6779c1..0000000
--- a/tests/pipelines/fetchdatairidanext.nf.test
+++ /dev/null
@@ -1,84 +0,0 @@
-nextflow_pipeline {
-
-    name "Test fetching small datasets from NCBI"
-    script "main.nf"
-
-    test("basic integration test") {
-
-        when {
-            params {
-                input = "$baseDir/tests/data/samplesheet.csv"
-                outdir = "test1_out"
-            }
-        }
-
-        then {
-            assert workflow.success
-
-            // IRIDA Next output file
-            assert path("$launchDir/test1_out/iridanext.output.json").json == path("$baseDir/tests/data/test1_iridanext.output.json").json
-
-            // Output data
-            assert path("$launchDir/test1_out/reads/ERR1109373_1.fastq.gz").linesGzip.size() == 512
-            assert path("$launchDir/test1_out/reads/ERR1109373_2.fastq.gz").linesGzip.size() == 512
-            assert path("$launchDir/test1_out/reads/SRR13191702_1.fastq.gz").linesGzip.size() == 364
-            assert path("$launchDir/test1_out/reads/SRR13191702_2.fastq.gz").linesGzip.size() == 364
-        }
-    }
-
-    test("integration test with prefetch failures") {
-
-        when {
-            params {
-                input = "$baseDir/tests/data/errorsheet.csv"
-                outdir = "results"
-            }
-        }
-
-        then {
-            assert workflow.success
-
-            // IRIDA Next output file
-            assert path("$launchDir/results/iridanext.output.json").json == path("$baseDir/tests/data/prefetch_errors_iridanext.output.json").json
-
-            // Output data:
-            assert path("$launchDir/results/reads/ERR1109373_1.fastq.gz").linesGzip.size() == 512
-            assert path("$launchDir/results/reads/ERR1109373_2.fastq.gz").linesGzip.size() == 512
-            assert path("$launchDir/results/reads/SRR13191702_1.fastq.gz").linesGzip.size() == 364
-            assert path("$launchDir/results/reads/SRR13191702_2.fastq.gz").linesGzip.size() == 364
-
-            // These files should have failed, and have no output reads:
-            assert path("$launchDir/results/reads/SRR999908_1.fastq.gz").exists() == false
-            assert path("$launchDir/results/reads/SRR999908_2.fastq.gz").exists() == false
-            assert path("$launchDir/results/reads/SRR999934_1.fastq.gz").exists() == false
-            assert path("$launchDir/results/reads/SRR999934_2.fastq.gz").exists() == false
-        }
-    }
-
-    test("Include sample_name in samplesheet") {
-        tag "sample_name"
-        when {
-            params {
-                input = "$baseDir/tests/data/add-samplesheet.csv"
-                outdir = "output"
-            }
-        }
-
-        then {
-            assert workflow.success
-            assert path("$launchDir/output").exists()
-            // Check that the failures report has a sample_name column when included in the samplesheet
-            def lines = path("$launchDir/output/prefetch/failures_report.csv").readLines()
-            assert lines.size() == 3
-            assert lines.contains("sample,sample_name,error_accession")
-            assert lines.contains("ERROR1,S2,SRR999908")
-            assert lines.contains("ERROR2,S3,SRR999934")
-
-            // Check reads have been produced with modified names (i.e. suffixed with sample_name):
-            assert path("$launchDir/output/reads/S1_ERR1109373_1.fastq.gz").exists()
-            assert path("$launchDir/output/reads/S1_ERR1109373_2.fastq.gz").exists()
-            assert path("$launchDir/output/reads/S4_SRR13191702_1.fastq.gz").exists()
-            assert path("$launchDir/output/reads/S4_SRR13191702_2.fastq.gz").exists()
-        }
-    }
-}