diff --git a/README.md b/README.md index 93a6949..9c06d86 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ The structure of this file is defined in [assets/schema_input.json](assets/schem `fetchdatairidanext` accepts the [IRIDA-Next](https://github.com/phac-nml/irida-next) format for samplesheets which can contain an additional column: `sample_name` -`sample_name`: An **optional** column, to allow for an override the default reads name with a `sample_name` prefix before the accession code. +`sample_name`: An **optional** column, to add the `sample_name` prefix before the accession code. `sample_name`, allows more flexibility in naming reads. Unlike `sample`, `sample_name` is not required to contain unique values. Non-alphanumeric characters (excluding `_`,`-`,`.`) will be replaced with `"_"`. `sample_name` can be provided without renaming by changing parameters.