diff --git a/nextflow_schema.json b/nextflow_schema.json
index 394b2a1..6852b8c 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -10,7 +10,10 @@
             "type": "object",
             "fa_icon": "fas fa-terminal",
             "description": "Define where the pipeline should find input data and save output data.",
-            "required": ["input", "outdir"],
+            "required": [
+                "input",
+                "outdir"
+            ],
             "properties": {
                 "input": {
                     "type": "string",
@@ -40,6 +43,18 @@
                 }
             }
         },
+        "additional_parameters": {
+            "title": "Additional Parameters",
+            "type": "object",
+            "description": "IRIDA-Next Parameters",
+            "default": "",
+            "properties": {
+                "rename_with_samplename": {
+                    "type": "boolean",
+                    "default": true
+                }
+            }
+        },
         "institutional_config_options": {
             "title": "Institutional config options",
             "type": "object",
@@ -133,7 +148,14 @@
                     "description": "Method used to save pipeline results to output directory.",
                     "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
                     "fa_icon": "fas fa-copy",
-                    "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
+                    "enum": [
+                        "symlink",
+                        "rellink",
+                        "link",
+                        "copy",
+                        "copyNoFollow",
+                        "move"
+                    ],
                     "hidden": true
                 },
                 "email_on_fail": {
@@ -205,6 +227,9 @@
         {
             "$ref": "#/definitions/input_output_options"
         },
+        {
+            "$ref": "#/definitions/additional_parameters"
+        },
         {
             "$ref": "#/definitions/institutional_config_options"
         },
@@ -214,11 +239,5 @@
         {
             "$ref": "#/definitions/generic_options"
         }
-    ],
-    "properties": {
-        "rename_with_samplename": {
-            "type": "boolean",
-            "default": true
-        }
-    }
+    ]
 }