Try modifying fasterqdump to add global x permissions on reads directory

phac-nml · Jan 24, 2024 · c6dd40c · c6dd40c
1 parent 172124c
commit c6dd40c
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/modules/local/sratools/fasterqdump/main.nf b/modules/local/sratools/fasterqdump/main.nf
@@ -42,6 +42,10 @@ process SRATOOLS_FASTERQDUMP {
         ${key_file} \\
         ${sra}
 
+    # Without this, I am unable to run tests for this module
+    # since I cannot access files in this directory
+    chmod a+x reads
+
     pigz \\
         $args2 \\
         --no-name \\