From bfe184b4255fe68f36ced26c79d0cdd927041704 Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Fri, 19 Apr 2024 10:13:29 -0500 Subject: [PATCH 1/4] Changed resource usage for prefetchchecker --- CHANGELOG.md | 8 ++++++++ modules/local/prefetchchecker/main.nf | 2 +- nextflow.config | 2 +- 3 files changed, 10 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index af9c591..ab1424b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,14 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [1.1.1] - 2024-04-19 + +### Added + +### Changed + +- Switched resource label for **prefetchchecker** from `process_low` to `process_single`. + ## [1.1.0] - 2024-04-10 ### Added diff --git a/modules/local/prefetchchecker/main.nf b/modules/local/prefetchchecker/main.nf index bec2527..4fe0a8d 100644 --- a/modules/local/prefetchchecker/main.nf +++ b/modules/local/prefetchchecker/main.nf @@ -1,6 +1,6 @@ process PREFETCH_CHECKER { tag "prefetch_checker" - label 'process_low' + label 'process_single' input: val failures // list of failures diff --git a/nextflow.config b/nextflow.config index 5e5b9b2..de1725a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -198,7 +198,7 @@ manifest { description = """IRIDA Next pipeline for fetching data from NCBI""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.1.0' + version = '1.1.1' doi = '' defaultBranch = 'main' } From 9f66af59dfa2c32d870b28b4f751c29f17cdbac6 Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Fri, 19 Apr 2024 10:25:43 -0500 Subject: [PATCH 2/4] Updated changelog --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ab1424b..7b54cec 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,7 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed -- Switched resource label for **prefetchchecker** from `process_low` to `process_single`. +- Switched the resource label for **prefetchchecker** from `process_low` to `process_single`. ## [1.1.0] - 2024-04-10 From 16b20e2efa7b9150ad3fcf05e63953524a982129 Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Fri, 19 Apr 2024 11:40:33 -0500 Subject: [PATCH 3/4] Removed testing with latest nextflow --- .github/workflows/ci.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 745d17e..919e126 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -25,7 +25,8 @@ jobs: matrix: NXF_VER: - "23.04.0" - - "latest-everything" + - "23.10.1" + #- "latest-everything" steps: - name: Check out pipeline code uses: actions/checkout@v3 From 1081d148a622f6dae411c65e63c9a92e5296c485 Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Fri, 19 Apr 2024 11:51:14 -0500 Subject: [PATCH 4/4] Updated changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7b54cec..8f2017f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed - Switched the resource label for **prefetchchecker** from `process_low` to `process_single`. +- Switched GitHub continuous integration to test against at most Nextflow `23.10.1` (due to differences in outputs with later Nextflow pre-releases). ## [1.1.0] - 2024-04-10