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@apetkau apetkau released this 24 Aug 21:45
· 1 commit to development since this release
0.10.0
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apetkau Aaron Petkau
GPG key ID: AD7E54B88BAAA273
Learn about vigilant mode.
8d59498
This commit was signed with the committer’s verified signature.
apetkau Aaron Petkau
GPG key ID: AD7E54B88BAAA273
Learn about vigilant mode.
  • Updated the Plasmidfinder database to use the January 18th 2023 release.
  • Fixed an issue where the string "None" in the drug table would be parsed differently by different versions of pandas (#175).
  • Upgraded to pandas version 2.
  • Added the CGE-predicted phenotypes, PMID, Mechanism, and the Required Mutation columns to the Pointfinder output.
  • The resfinder.tsv and pointfinder.tsv outputs now contain a Notes column.
  • Updated the help description of the --mlst-scheme parameter to include a more useful link for available schemas.
  • Switched to only officially supporting Python 3.7+ due to recent incompatibilities with Python 3.6 and some Python packages (numpy, biopython, and others).
  • Adds the ability to handle "complex" pbp5 mutations. When appriopriate many pbp5 point mutations will be reported as a single mutation.
  • Resfinder CGE-predicted phenotypes are now reported in the summary and detailed summary alongside existing predictions.
  • Corrected a typo in the position for acrB in the PointFinder drug key table.
  • Removed "enterobacteriaceae" from the list of supported PlasmindFinder databases.
  • Changed the word sensitive to susceptible in outputs.
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