fix seq sequence discordance #3

phiweger · May 12, 2017 · 17a826c · 17a826c
1 parent 45fa400
commit 17a826c
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/zoo/load.py b/zoo/load.py
@@ -96,9 +96,7 @@ def write_record(out, accession, record, fmt):
         with open(os.path.join(out, accession + ext[fmt]), 'w') as output:
             print(record, file=output)
     elif fmt == 'json':
-        record['seq'] = record.pop('sequence')
-        # Biopython calls sequence field "sequence" while we want to work
-        # with "seq". Inconvenient.
+        record = record.replace('sequence', 'seq')  # TODO: this is too hacky
         with open(out, 'a+') as output:
             print(record, file=output)
         # 'a+' append to file