check.yaml

on:
  push:
  pull_request:
    branches:
      - devel
    paths-ignore:
      - 'README.md'

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ubuntu-latest
    container: plger/scdblfinder:latest

    steps:
      - name: Check out repo
        uses: actions/checkout@v2

      - name: Install latest BiocCheck
        run: BiocManager::install(c("BiocCheck"))
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", check_dir = "check")
        shell: Rscript {0}

      - name: BiocCheck
        run: BiocCheck::BiocCheck(".")
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@master
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check

      - name: Show testthat output
        if: always()
        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash