diff --git a/DESCRIPTION b/DESCRIPTION index c249c47..66af9d8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: scDblFinder Type: Package Title: scDblFinder -Version: 1.19.8 +Version: 1.19.9 Authors@R: c( person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")), person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb")) diff --git a/R/scDblFinder.R b/R/scDblFinder.R index 48976f3..341ed83 100644 --- a/R/scDblFinder.R +++ b/R/scDblFinder.R @@ -199,7 +199,7 @@ scDblFinder <- function( sce, clusters=NULL, samples=NULL, clustCor=NULL, artificialDoublets=NULL, knownDoublets=NULL, knownUse=c("discard","positive"), dbr=NULL, dbr.sd=NULL, - dbr.per1k=0.08, nfeatures=1352, dims=20, k=NULL, removeUnidentifiable=TRUE, + dbr.per1k=0.008, nfeatures=1352, dims=20, k=NULL, removeUnidentifiable=TRUE, includePCs=19, propRandom=0, propMarkers=0, aggregateFeatures=FALSE, returnType=c("sce","table","full","counts"), score=c("xgb","weighted","ratio"), processing="default", metric="logloss", diff --git a/inst/NEWS b/inst/NEWS index d1cbf00..9474aef 100644 --- a/inst/NEWS +++ b/inst/NEWS @@ -1,3 +1,7 @@ +Changes in version 1.19.9 (2025-01-07) ++ fixed the default dbr.per1k value in the top-level function ++ slight memory improvements (gc and not coercing DelayedArray before sample split) + Changes in version 1.19.6 (2024-09-19) + added a dbr.per1k parameter to set doublet rates per thousands of cells, updated the default from 1 to 0.8\% + fixed some issues stemming from the cxds score in some corner cases (absence of inverse correlation between genes)