revert #9

	on:
	push:
	branches:
	- master
	paths:
	- DESCRIPTION
	pull_request:
	branches:
	- master
	paths:
	- DESCRIPTION

	name: R-CMD-check

	jobs:
	R-CMD-check:
	runs-on: ubuntu-latest
	container: bioconductor/bioconductor_docker:devel

	steps:
	- name: Check out repo
	uses: actions/checkout@v2

	- name: Query dependencies
	run: \|
	saveRDS(remotes::dev_package_deps(dependencies = TRUE, repos = c(getOption('repos'), BiocManager::repositories())), 'depends.Rds', version = 2)
	shell: Rscript {0}

	- name: Cache R packages
	uses: actions/cache@v1
	with:
	path: r-pkg-cache
	key: ${{ runner.os }}-${{ hashFiles('depends.Rds') }}
	restore-keys: ${{ runner.os }}-

	- name: Install dependencies
	run: \|
	remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories(), Ncpu = 2L)
	BiocManager::install('devtools')
	BiocManager::install('BiocCheck')
	remotes::install_cran('rcmdcheck', Ncpu = 2L)
	shell: Rscript {0}

	- name: Session info
	run: \|
	options(width = 100)
	pkgs <- installed.packages()[, "Package"]
	sessioninfo::session_info(pkgs, include_base = TRUE)
	shell: Rscript {0}

	- name: Check
	env:
	_R_CHECK_CRAN_INCOMING_REMOTE_: false
	run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", check_dir = "check")
	shell: Rscript {0}

	- name: BiocCheck
	run: \|
	BiocCheck::BiocCheck(".")
	shell: Rscript {0}

	- name: Upload check results
	if: failure()
	uses: actions/upload-artifact@master
	with:
	name: ${{ runner.os }}-r${{ matrix.config.r }}-results
	path: check

	- name: Show testthat output
	if: always()
	run: find check -name 'testthat.Rout*' -exec cat '{}' \; \|\| true
	shell: bash

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