add function in run_all.sh, fix issue with TAG ...

FILTERS/filter_grid-T

@@ -1 +1 @@
---cnk_dmn deptht,1 --cnk_dmn time_counter,1 --cnk_dmn x,200 --cnk_dmn y,200 -v (^thetao$)+,(^votemper$),(^so$)+,(^vosaline$)+,(^zos$)+,(^sossheig$)+,(^somxzint1$)+,(^sokaraml$)+,(^hfds$)+,(^sohefldo$)+,(^soicecov$)+
+--cnk_dmn deptht,1 --cnk_dmn time_counter,1 --cnk_dmn x,200 --cnk_dmn y,200 -v (^thetao$)+,(^votemper$)+,(^so$)+,(^vosaline$)+,(^zos$)+,(^sossheig$)+,(^somxzint1$)+,(^sokaraml$)+,(^hfds$)+,(^sohefldo$)+,(^soicecov$)+

OBS/AMHT_obs.txt

@@ -0,0 +1,3 @@
+ref = L. Jackson
+mean = 1.2
+std = 0.2

OBS/AMOC_obs.txt

@@ -0,0 +1,3 @@
+ref = L. Jackson
+mean = 17.5
+std = 2.5

OBS/ANT_sie02_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot 
+mean = 3
+std = 1

OBS/ANT_sie09_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot 
+mean = 18.5
+std = 1.5

OBS/ARC_sie03_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot 
+mean = 15.3
+std = 1.0

OBS/ARC_sie09_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot 
+mean = 6.3
+std = 1

OBS/NWC_sst_mean_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot
+mean = 12.1
+std = 1.

OBS/SO_sst_mean_obs.txt

@@ -0,0 +1,3 @@
+ref = P. Mathiot
+mean = 7.4403515925274846
+std = 1.

SCRIPT/common.bash

@@ -1,7 +1,6 @@
 #!/bin/bash
 
 # create repository
-DATPATH=${SCRATCH}/ACC/$CONFIG/$RUNID/           
 if [ ! -d $DATPATH ]; then mkdir -p $DATPATH ; fi
 
 # check mesh mask

SCRIPT/get_data.bash

@@ -27,7 +27,7 @@ fi
 
 if   [ $FREQ == '5d'  ]; then FILE_LST=`moo ls moose:/crum/$RUNID/${CRUM_FREQ}.nc.file/*_${FREQ}_${GRID}_${TAG}.nc`
 elif [ $FREQ == 'i1m' ]; then FILE_LST=`moo ls moose:/crum/$RUNID/${CRUM_FREQ}.nc.file/*_1m_${TAG}.nc`
-else FILE_LST=`moo ls moose:/crum/$RUNID/${CRUM_FREQ}.nc.file/*_${FREQ}_${TAG}_${GRID}.nc`;
+else FILE_LST=`moo ls moose:/crum/$RUNID/${CRUM_FREQ}.nc.file/*_${FREQ}_${TAG}*_${GRID}.nc`;
 fi
 
 for MFILE in `echo ${FILE_LST}`; do

SCRIPT/mk_bot.bash

@@ -25,7 +25,7 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-${GRID}
 
 # check presence of input file
-FILE=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
+FILE=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-${GRID}.nc`
 if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make bot
@@ -36,23 +36,23 @@ $CDFPATH/cdfbottom -f $FILE -nc4 -o tmp_$FILEOUT
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfbottom; exit"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ;
+   echo "error when running cdfbottom; exit"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ;
    exit 1
 fi
 
 # Amundsen avg (CDW)
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v '|thetao|votemper|' -p T -var -w 710 741 202 266 0 0 -minmax -o AMU_thetao_$FILEOUT ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (AMU)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (AMU)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
 
 # WRoss avg (bottom water)
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v '|so|vosaline|'     -p T -var -w 347 404 150 233 0 0 -minmax -o WROSS_so_$FILEOUT     ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (WROS)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (WROS)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
 
 # ERoss avg (CDW)
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v '|thetao|votemper|' -p T -var -w 448 519 152 180 0 0 -minmax -o EROSS_thetao_$FILEOUT ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (EROSS)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (EROSS)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
 
 # Weddell Avg (bottom water)
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v '|so|vosaline|'     -p T -var -w 891 938 204 258 0 0 -minmax -o WED_so_$FILEOUT     ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (WWED)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (WWED)"; echo "E R R O R in : ./mk_bot.bash $@ (see SLURM/${CONFIG}/${RUNID}/bot_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
 #

SCRIPT/mk_hfds.bash

@@ -24,8 +24,8 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-${GRID}
 
 # check presence of input file
-FILE=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
-if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_hfds.bash $@ (see SLURM/${CONFIG}/${RUNID}/hfds_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILE=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-${GRID}.nc`
+if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_hfds.bash $@ (see SLURM/${CONFIG}/${RUNID}/hfds_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make mxl
 FILEOUT=GLO_hfds_nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
@@ -35,6 +35,6 @@ if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILE -v '|sohefldo|hfds
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_hfds.bash $@ (see SLURM/${CONFIG}/${RUNID}/hfds_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_hfds.bash $@ (see SLURM/${CONFIG}/${RUNID}/hfds_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 #

SCRIPT/mk_mht.bash

@@ -23,8 +23,8 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-V
 
 # check presence of input file
-FILEV=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-V.nc
-if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_mht.bash $@ (see SLURM/${CONFIG}/${RUNID}/mht_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILEV=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-V.nc`
+if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_mht.bash $@ (see SLURM/${CONFIG}/${RUNID}/mht_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make mht
 set -x
@@ -35,8 +35,8 @@ $CDFPATH/cdfmhst -vt $FILEV -vvl -o tmp_$FILEOUT
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfmht; exit"; echo "E R R O R in : ./mk_mht.bash $@ (see SLURM/${CONFIG}/${RUNID}/mht_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmht; exit"; echo "E R R O R in : ./mk_mht.bash $@ (see SLURM/${CONFIG}/${RUNID}/mht_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 
 # extract only 26.5
-ncks -O -d y,793,793 $FILEOUT nemo_${RUN_NAME}o_${FREQ}_${TAG}_mht_265.nc
+if [ $CONFIG == 'eORCA025' ]; then ncks -O -d y,793,793 $FILEOUT nemo_${RUN_NAME}o_${FREQ}_${TAG}_mht_265.nc ; fi

SCRIPT/mk_moc.bash

@@ -24,24 +24,23 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-U
 
 # check presence of input file
-FILEV=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-V.nc
-FILEU=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-U.nc
-FILET=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-T.nc
-FILES=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-T.nc
-if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
-if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
-if [ ! -f $FILET ] ; then echo "$FILET is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
-if [ ! -f $FILES ] ; then echo "$FILES is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILEV=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-V.nc`
+FILEU=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-U.nc`
+FILET=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-T.nc`
+FILES=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-T.nc`
+if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+if [ ! -f $FILET ] ; then echo "$FILET is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+if [ ! -f $FILES ] ; then echo "$FILES is missing; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make moc
-set -x
 FILEOUT=nemo_${RUN_NAME}o_${FREQ}_${TAG}_moc.nc
 $CDFPATH/cdfmoc -v $FILEV -u $FILEU -t $FILET -s $FILES -rapid -vvl -o tmp_$FILEOUT
 
 # mv output file
 if [[ $? -eq 0 ]]; then 
    mv rapid_tmp_$FILEOUT rapid_$FILEOUT
 else 
-   echo "error when running cdfmoc; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmoc; exit"; echo "E R R O R in : ./mk_moc.bash $@ (see SLURM/${CONFIG}/${RUNID}/moc_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 

SCRIPT/mk_mxl.bash

@@ -24,8 +24,8 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-${GRID}
 
 # check presence of input file
-FILE=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
-if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_mxl.bash $@ (see SLURM/${CONFIG}/${RUNID}/mxl_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILE=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-${GRID}.nc`
+if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_mxl.bash $@ (see SLURM/${CONFIG}/${RUNID}/mxl_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make mxl
 FILEOUT=WMXL_nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
@@ -35,6 +35,6 @@ if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILE -v '|somxzint1|sok
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfmxl; exit"; echo "E R R O R in : ./mk_mxl.bash $@ (see SLURM/${CONFIG}/${RUNID}/mxl_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmxl; exit"; echo "E R R O R in : ./mk_mxl.bash $@ (see SLURM/${CONFIG}/${RUNID}/mxl_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 #

SCRIPT/mk_psi.bash

@@ -24,10 +24,10 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-U
 
 # check presence of input file
-FILEU=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-U.nc
-FILEV=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-V.nc
-if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
-if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILEU=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-U.nc`
+FILEV=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-V.nc`
+if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make psi
 FILEOUT=nemo_${RUN_NAME}o_${FREQ}_${TAG}_psi.nc
@@ -37,13 +37,13 @@ $CDFPATH/cdfpsi -u $FILEU -v $FILEV -vvl -nc4 -ref 1 1 -o tmp_$FILEOUT
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfpsi; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfpsi; exit"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 
 # WG max
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v sobarstf -p T -w 1025 1300 325 380 0 0 -minmax -o WG_$FILEOUT ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (WG)"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (WG)"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
 
 # RG max
 if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILEOUT -v sobarstf -p T -w 476 607 254 370 0 0 -minmax -o RG_$FILEOUT ; fi
-if [ $? -ne 0 ] ; then echo "error when running cdfmean (RG)"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi
+if [ $? -ne 0 ] ; then echo "error when running cdfmean (RG)"; echo "E R R O R in : ./mk_psi.bash $@ (see SLURM/${CONFIG}/${RUNID}/psi_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; fi

SCRIPT/mk_sie.bash

@@ -24,16 +24,16 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-${GRID}
 
 # check presence of input file
-FILE=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-T.nc
-if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_sie.bash $@ (see SLURM/${CONFIG}/${RUNID}/sie_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILE=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-T.nc`
+if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_sie.bash $@ (see SLURM/${CONFIG}/${RUNID}/sie_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make sie
 FILEOUT=ARC_sie_nemo_${RUN_NAME}o_${FREQ}_${TAG}.nc
-if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdficediags -i $FILE -o tmp_$FILEOUT ; fi
+$CDFPATH/cdficediags -i $FILE -o tmp_$FILEOUT
 
 # mv output file
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdficediags; exit"; echo "E R R O R in : ./mk_sie.bash $@ (see SLURM/${CONFIG}/${RUNID}/sie_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdficediags; exit"; echo "E R R O R in : ./mk_sie.bash $@ (see SLURM/${CONFIG}/${RUNID}/sie_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi

SCRIPT/mk_sst.bash

@@ -24,8 +24,8 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-${GRID}
 
 # check presence of input file
-FILE=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
-if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILE=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-${GRID}.nc`
+if [ ! -f $FILE ] ; then echo "$FILE is missing; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make sst
 FILEOUT=SO_sst_nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
@@ -35,7 +35,7 @@ if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILE -v '|thetao|votemp
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi
 
 FILEOUT=NWC_sst_nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-${GRID}.nc
@@ -45,5 +45,5 @@ if [ $CONFIG == 'eORCA025' ] ; then $CDFPATH/cdfmean -f $FILE -surf -v '|thetao|
 if [[ $? -eq 0 ]]; then 
    mv tmp_$FILEOUT $FILEOUT
 else 
-   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdfmean; exit"; echo "E R R O R in : ./mk_sst.bash $@ (see SLURM/${CONFIG}/${RUNID}/sst_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi

SCRIPT/mk_trp.bash

@@ -24,16 +24,16 @@ RUN_NAME=${RUNID#*-}
 #${SCRPATH}/get_data.bash $RUNID $FREQ $TAG grid-U
 
 # check presence of input file
-FILEV=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-V.nc
-FILEU=nemo_${RUN_NAME}o_${FREQ}_${TAG}_grid-U.nc
-if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
-if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+FILEV=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-V.nc`
+FILEU=`ls nemo_${RUN_NAME}o_${FREQ}_${TAG}-????????_grid-U.nc`
+if [ ! -f $FILEV ] ; then echo "$FILEV is missing; exit"; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
+if [ ! -f $FILEU ] ; then echo "$FILEU is missing; exit"; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1 ; fi
 
 # make trp
 $CDFPATH/cdftransport -u $FILEU -v $FILEV -noheat -vvl -pm  -sfx nemo_${RUN_NAME}o_${FREQ}_${TAG} < ${EXEPATH}/SECTIONS/section_${CONFIG}.dat
 
 # mv output file
 if [[ $? -eq 0 ]]; then 
 else 
-   echo "error when running cdftransport; exit" ; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
+   echo "error when running cdftransport; exit" ; echo "E R R O R in : ./mk_trp.bash $@ (see SLURM/${CONFIG}/${RUNID}/trp_${FREQ}_${TAG}.out)" >> ${EXEPATH}/ERROR.txt ; exit 1
 fi

SCRIPT/plot_time_series.py

@@ -298,10 +298,10 @@ def main():
             nyt=10
         else:
             nyt=100
-        nmt=ts_lst[irun].index[-1].to_pydatetime().date().month
-        ndt=ts_lst[irun].index[-1].to_pydatetime().date().day
+        nmt=ts_lst[irun].index[0].to_pydatetime().date().month
+        ndt=ts_lst[irun].index[0].to_pydatetime().date().day
 
-        ax[ivar].xaxis.set_major_locator(mdates.YearLocator(nyt,month=nmt,day=1))
+        ax[ivar].xaxis.set_major_locator(mdates.YearLocator(nyt,month=1,day=1))
         ax[ivar].tick_params(axis='both', labelsize=16)
         if (ivar != nvar-1):
             ax[ivar].set_xticklabels([])
@@ -312,12 +312,11 @@ def main():
             lt.set_ha('center')
 
         rmin[ivar],rmax[ivar]=get_ybnd(run_lst,obs_min[ivar],obs_max[ivar])
-        print rmin[ivar], rmax[ivar]
         ax[ivar].set_ylim([rmin[ivar],rmax[ivar]])
         ax[ivar].grid()
 
     # tidy up space
-    plt.subplots_adjust(left=0.07, right=0.8, bottom=0.2, top=0.92, wspace=0.15, hspace=0.15)
+    plt.subplots_adjust(left=0.1, right=0.8, bottom=0.2, top=0.92, wspace=0.15, hspace=0.15)
 
     # add legend
     add_legend(lg,ax[nvar-1])